Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000300-TA|BGIBMGA000300-PA|IPR005835|Nucleotidyl
transferase
         (451 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    25   0.98 
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    25   0.98 
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   2.3  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   3.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   3.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   3.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    23   4.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   4.0  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   6.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 325 LSNNKILSKWQDLTGSSLFERFHPNSEVKTIQIDDNCTVGEKTIINEKTSVKNSFIGS-- 382
           +SNN   ++W     +++       SEV+ + +   C    K ++N    ++ SFIG+  
Sbjct: 384 MSNNNQRTEWSATVKAAI-------SEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGTLQ 436

Query: 383 NC--NIENKVRLTNCILMNNVTIKESLA 408
            C  ++E       C+L ++  +K+ L+
Sbjct: 437 RCLLSLEKTYERDTCLLASD-ALKQILS 463


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 25.4 bits (53), Expect = 0.98
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 12/88 (13%)

Query: 325 LSNNKILSKWQDLTGSSLFERFHPNSEVKTIQIDDNCTVGEKTIINEKTSVKNSFIGS-- 382
           +SNN   ++W     +++       SEV+ + +   C    K ++N    ++ SFIG+  
Sbjct: 422 MSNNNQRTEWSATVKAAI-------SEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGTLQ 474

Query: 383 NC--NIENKVRLTNCILMNNVTIKESLA 408
            C  ++E       C+L ++  +K+ L+
Sbjct: 475 RCLLSLEKTYERDTCLLASD-ALKQILS 501


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 330 ILSKWQDLTGSSLFERFHPNSEVKTIQIDDNCTVGEKTIINEKTSVKN 377
           +LS W D  G   FE   PN  + ++   +  T     +  ++  + N
Sbjct: 67  LLSVWWDYKGIVYFELLSPNRTINSVVYIEQLTKLNNAVEEKRPELTN 114


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 330 ILSKWQDLTGSSLFERFHPNSEVKTIQIDDNCTVGEKTIINEKTSVKN 377
           +LS W D  G   FE   PN  + ++   +  T     +  ++  + N
Sbjct: 189 LLSVWWDYKGIVYFELLPPNRTINSVVYIEQLTKLNNAVEEKRPELTN 236


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 335 QDLTGSSLFERFHP 348
           QD+ G SLF+ +HP
Sbjct: 336 QDMVGRSLFDFYHP 349


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 3.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 335 QDLTGSSLFERFHP 348
           QD+ G SLF+ +HP
Sbjct: 42  QDMVGRSLFDFYHP 55


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 279 IREISAYNDHKHGNKGVYFN 298
           I  IS YN++ + NK +Y+N
Sbjct: 90  ISNISNYNNNNNYNKKLYYN 109


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 279 IREISAYNDHKHGNKGVYFN 298
           I  IS YN++ + NK +Y+N
Sbjct: 328 ISNISNYNNNNNYNKKLYYN 347


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 279 IREISAYNDHKHGNKGVYFN 298
           I  IS YN+  + NK +Y+N
Sbjct: 90  ISNISNYNNDNNYNKKLYYN 109


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,494
Number of Sequences: 429
Number of extensions: 6128
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 11
length of query: 451
length of database: 140,377
effective HSP length: 60
effective length of query: 391
effective length of database: 114,637
effective search space: 44823067
effective search space used: 44823067
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)