GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000300-TA|BGIBMGA000300-PA|IPR005835|Nucleotidyl
transferase
         (451 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   4.4  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   5.8  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 319 TLSSFYLSNNKILSKWQDLTGS 340
           +L   YL +NK+L+  +DL G+
Sbjct: 249 SLMQLYLGHNKLLNATKDLFGN 270


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.6 bits (46), Expect = 5.8
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)

Query: 368 IINEKTSVKNSFIGSNCNI-ENKVRLTNCILMN 399
           I NE+   +NS + S   + ENK+ +T C L N
Sbjct: 318 ICNEEE--RNSVVASVLQLMENKIEITACRLFN 348


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,103
Number of Sequences: 317
Number of extensions: 4805
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 2
length of query: 451
length of database: 114,650
effective HSP length: 59
effective length of query: 392
effective length of database: 95,947
effective search space: 37611224
effective search space used: 37611224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)