Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000300-TA|BGIBMGA000300-PA|IPR005835|Nucleotidyl
transferase
(451 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0238 - 13357877-13357954,13358186-13358302,13358537-133586... 138 8e-33
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039... 49 9e-06
01_06_1598 + 38535077-38535368,38536381-38536463,38536575-385366... 34 0.27
12_01_0947 - 9396320-9396483,9396822-9397025,9397769-9398009,939... 33 0.47
02_04_0009 - 18865087-18866249,18866357-18866471,18866555-188666... 29 7.6
>06_02_0238 -
13357877-13357954,13358186-13358302,13358537-13358641,
13359301-13359393,13359801-13359888,13359979-13360028,
13361147-13361205,13361297-13361516,13361611-13361691,
13364034-13364111,13364203-13364298,13364370-13364435
Length = 376
Score = 138 bits (334), Expect = 8e-33
Identities = 85/246 (34%), Positives = 139/246 (56%), Gaps = 7/246 (2%)
Query: 5 LEFQVVVLAAGKGSRM-PDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDED 63
++FQVVVLA G ++ P V V K LLPV PVL Y L++LE +D+++VV ++
Sbjct: 1 MDFQVVVLAGGTSEKLSPLVSKDVPKALLPVANRPVLSYVLDLLEASDLKDIIVVVEGQE 60
Query: 64 KSNILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARIN-TDLLVISGDLITNINLN 122
+ ++ A + + V+ ED GTA +L+ +S R+ D+LVISGDL+T++
Sbjct: 61 AARLVGAWASSAYLDRLLVEVVAVPEDIGTAGALRAISKRLTANDVLVISGDLVTDVLPG 120
Query: 123 DVLNLHRKHDACVTTLFFN---NGPEEWIELPGPKTKSKPDR-DLVCIDKETERLVFLAS 178
V HR++ A VT L + +GP + G KP R ++V +D + L+ + S
Sbjct: 121 AVAATHRRNGAAVTALLCSVPISGPSDAASSGGKDKAKKPTRLNIVGLDITRQFLLHIVS 180
Query: 179 ASDFEENVTIPRLLVKKYDALSIYSRLLDAHVYVMKHWILDYIV-DSEKFTSIKGEVVPY 237
+D E++V + + ++ + I S L+DAH+Y K L I+ + E + SI+ EV+PY
Sbjct: 181 GTDVEKDVRVYKRKIRAVGEMEIRSDLMDAHLYAFKRTTLQNILEEKESYRSIRLEVLPY 240
Query: 238 IVKKQL 243
+V+ QL
Sbjct: 241 LVRSQL 246
Score = 46.4 bits (105), Expect = 5e-05
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 11/139 (7%)
Query: 275 YERKIR---EISAYNDHKHGNKGVYFNDTLRCYAHIPSKNTF-AIRVNTLSSFYLSNNKI 330
Y+RKIR E+ +D + + TL+ + K ++ +IR+ L + + + +
Sbjct: 191 YKRKIRAVGEMEIRSDLMDAHLYAFKRTTLQNI--LEEKESYRSIRLEVLP-YLVRSQLV 247
Query: 331 LSKWQDLTGSSLFER---FHPNSEVKT-IQIDDNCTVGEKTIINEKTSVKNSFIGSNCNI 386
+ L+G S + HP S + + I C + E + + +K SVK S IG +C I
Sbjct: 248 VGDASHLSGYSFSAQNNIIHPTSVLGSKTTIGPQCMLAEGSQLGDKCSVKRSVIGRHCRI 307
Query: 387 ENKVRLTNCILMNNVTIKE 405
+ V++ N ++MN+V I++
Sbjct: 308 GSNVKIVNSVVMNHVVIED 326
>02_05_1184 +
34802749-34802892,34802981-34803220,34803636-34803950,
34804030-34804209,34804312-34804504,34805062-34805324,
34805461-34805590,34805719-34805786,34805951-34806199,
34806284-34806357,34808052-34808143,34808603-34808685,
34810337-34810408,34810558-34810683,34810996-34811037
Length = 756
Score = 48.8 bits (111), Expect = 9e-06
Identities = 51/211 (24%), Positives = 96/211 (45%), Gaps = 18/211 (8%)
Query: 8 QVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNI 67
Q V+LA + + K LLP+ P++ Y L+ LE G ++ + + +
Sbjct: 27 QAVLLADSFTLKFRPITLERPKVLLPLVNVPMIEYTLSWLESAGVEECFVFCCAHAQQ-V 85
Query: 68 LNALEKC-----PLKIKYELIVIPSEEDWGTANSLKHVSAR--INTDLLVISGDLITNIN 120
L K P + + + S + ++L+ + R I+ D ++ISGD I+N+N
Sbjct: 86 KEHLGKAGWTGKPAAREMTVTAVESHDAISAGDALRVMYGRGVIHGDFVLISGDTISNMN 145
Query: 121 LNDVLNLH---RKHD--ACVTTLFFNNGPEEWIELPGPKTKSKPDRDLVCIDKETERLVF 175
L D L H RK D A +T + ++ P + +T+ D ++ ID ET+ L++
Sbjct: 146 LKDALQEHKDRRKKDPLAVMTMVIKHSKP----SILTNQTRLGNDEIVMAIDPETKELLY 201
Query: 176 LASASDFEE-NVTIPRLLVKKYDALSIYSRL 205
+D VTI + ++ L +++ +
Sbjct: 202 YEDRADVSNLYVTIDKDILASNPTLQLHNNM 232
Score = 42.7 bits (96), Expect = 6e-04
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 289 KHGNKGVYFNDTL--RCYAHIPSKNTFAIRVNTLSSFYLSNNKILSKWQ-----DLT--G 339
+H KG+ +D + + Y H ++++A R++ S+ + I+ +W D+ G
Sbjct: 283 RHFVKGLLVDDIMGYKIYTH-EIRSSYAARIDNFRSYDTVSKDIIQRWTYPMVPDVLSFG 341
Query: 340 SSLFERFHPNSEVK--------TIQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVR 391
+ H K + QI N VG T + E V NS IG CNI V
Sbjct: 342 DRQEIKLHRQGIYKASDVTLSHSAQIGANSVVGNGTSVGENCKVSNSVIGQGCNIGKNVL 401
Query: 392 LTNCILMNNVTIKE 405
+ + +NVTI++
Sbjct: 402 IHGSYIWDNVTIED 415
>01_06_1598 +
38535077-38535368,38536381-38536463,38536575-38536643,
38537127-38537182,38537275-38537354,38537496-38537578,
38537682-38537759,38538133-38538201,38538366-38538434,
38538520-38538566,38538656-38538746,38538839-38538892
Length = 356
Score = 33.9 bits (74), Expect = 0.27
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 9 VVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNIL 68
VV+L+ G+G RM G S+ K LP+ P+ + L ++ ++VV D D +I
Sbjct: 136 VVLLSGGQGKRM---GASMPKQYLPLLGLPIALHSLKTFCQLKEVKEVVVVCDPDYKDIF 192
Query: 69 -NALEKCPLKIKYEL 82
++E + IK+ L
Sbjct: 193 EGSIENVQIPIKFAL 207
>12_01_0947 -
9396320-9396483,9396822-9397025,9397769-9398009,
9399052-9399387
Length = 314
Score = 33.1 bits (72), Expect = 0.47
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 325 LSNNKILSKWQDLTGSSLFERFH-PNSE----VKTIQIDDNCTVGEKTIINEKTSVKNSF 379
L+ N+++SKW+ LTG SL E+FH P E +K + +G I + + N
Sbjct: 228 LTQNELISKWETLTGKSL-EKFHIPGDEFLASMKDLDFASQVGIGHYYHIFYEGCLANFE 286
Query: 380 IGSN 383
IG N
Sbjct: 287 IGDN 290
>02_04_0009 -
18865087-18866249,18866357-18866471,18866555-18866607,
18866703-18866963,18867100-18867150,18867255-18867503,
18867634-18867856,18867958-18868071
Length = 742
Score = 29.1 bits (62), Expect = 7.6
Identities = 18/71 (25%), Positives = 34/71 (47%)
Query: 82 LIVIPSEEDWGTANSLKHVSARINTDLLVISGDLITNINLNDVLNLHRKHDACVTTLFFN 141
L V+ S + +GT + I+ L+I+G + N+ ++++ L + + F
Sbjct: 223 LFVLFSMQRFGTDKVGYTFAPVISVWFLLIAGIGMYNLTVHEITILRAFNPKYIVDYFRR 282
Query: 142 NGPEEWIELPG 152
NG E W+ L G
Sbjct: 283 NGKEAWVSLGG 293
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,748,466
Number of Sequences: 37544
Number of extensions: 531305
Number of successful extensions: 1098
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 12
length of query: 451
length of database: 14,793,348
effective HSP length: 84
effective length of query: 367
effective length of database: 11,639,652
effective search space: 4271752284
effective search space used: 4271752284
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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