Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000300-TA|BGIBMGA000300-PA|IPR005835|Nucleotidyl
transferase
(451 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50672| Best HMM Match : No HMM Matches (HMM E-Value=.) 170 2e-42
SB_41967| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 5e-11
SB_46662| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 5e-11
SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.004
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.12
SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11) 34 0.27
SB_28479| Best HMM Match : Exo_endo_phos (HMM E-Value=0.087) 33 0.63
SB_49380| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.83
SB_45951| Best HMM Match : DinI (HMM E-Value=2.2) 32 0.83
SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11) 32 0.83
SB_32334| Best HMM Match : UPF0058 (HMM E-Value=4.6) 32 0.83
SB_28837| Best HMM Match : DinI (HMM E-Value=2.2) 32 0.83
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 31 1.4
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_39987| Best HMM Match : FtsL (HMM E-Value=0.4) 30 4.4
SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9) 30 4.4
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 5.8
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.8
SB_19619| Best HMM Match : DUF963 (HMM E-Value=9.8) 29 5.8
SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24) 29 5.8
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
>SB_50672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 368
Score = 170 bits (413), Expect = 2e-42
Identities = 110/358 (30%), Positives = 189/358 (52%), Gaps = 30/358 (8%)
Query: 74 CPLKIKYELIVIPSEEDWGTANSLKHVSARINTDLLVISGDLITNINLNDVLNLHRKHDA 133
C K+K+EL IP + D GTA+SL+H+ I D++VIS DLIT++ L+ + ++HR +DA
Sbjct: 3 CNPKLKFELKTIPDDIDMGTADSLRHIKDVIEKDVIVISCDLITDLPLHRLADIHRTYDA 62
Query: 134 CVTTLFF----NNGPEEWIELPGPKTKSKP--DRDLVCIDKETERLVFLASASDFEENVT 187
VT L + E P K K + + + +D + RL+F AS +D EE +
Sbjct: 63 SVTALLAPVPETSADREAASNPKAKKKKQQIVQKHYIALDSKESRLLFCASEADLEETLI 122
Query: 188 IPRLLVKKYDALSIYSRLLDAHVYVMKHWILDYIVDSEKFTSIKGEVVPYIVKKQLTKPN 247
+ + L+K+Y ++I +RL+D H+Y+MK WI+DY+V ++ ++IKGE++P++VKKQ K
Sbjct: 123 VRKALLKRYPCINIVTRLVDTHLYIMKKWIIDYLVQNKSISTIKGELIPFLVKKQFQKQK 182
Query: 248 N------LVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNKGVYFNDTL 301
L + S + + + E R +S+++ +KG + L
Sbjct: 183 KDKVGLPLNDTASISMAGDDRKTDVLSFLAEDEITVATRGLSSWSGTCTTDKG--DGNAL 240
Query: 302 RCYAHIPSKNTFAIRVNTLSSFYLSNNKILSKWQDLTGSSLFERFHPNSEVKTIQIDDNC 361
RC+A++ ++ + NTL Y+ N+++ + +S+ VK
Sbjct: 241 RCHAYV-MESGLCLNANTL-QLYMEANRLVGS-DSMVDASV--SIGDKVSVK------RS 289
Query: 362 TVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCILMNNVTIKESLAQLTMTPKDCRV 419
+G+ T I +K + NS I + I++ +T+ I+ NN IKE+ A L KDC+V
Sbjct: 290 VIGKHTTIGDKVKISNSVIMDHVTIKDGCNITSSIVCNNAYIKEN-ASL----KDCQV 342
>SB_41967| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 66.1 bits (154), Expect = 5e-11
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 6 EFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQ 53
EFQ V++AAG GSRM + + K LLPVG P++WYP+N LEK GF+
Sbjct: 50 EFQAVIMAAGSGSRMYPISEDIPKALLPVGNLPLIWYPINTLEKAGFE 97
>SB_46662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 66.1 bits (154), Expect = 5e-11
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 6 EFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQ 53
EFQ V++AAG GSRM + + K LLPVG P++WYP+N LEK GF+
Sbjct: 3 EFQAVIMAAGSGSRMYPISEDIPKALLPVGNLPLIWYPINTLEKAGFE 50
>SB_45181| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 747
Score = 39.9 bits (89), Expect = 0.004
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 357 IDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCILMNNVTIKES 406
+++N +G T + T + N+ IG NC I + VR+ L +NVT++++
Sbjct: 91 LEENLIIGGGTSVGTGTVISNTVIGKNCAIGDNVRIEGAHLWDNVTVEDN 140
>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 35.1 bits (77), Expect = 0.12
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 4/101 (3%)
Query: 355 IQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCIL--MNNVTIKESLAQLTM 412
+++ +N + ++NEKTS +S N N+E K+R + +NN E+L Q TM
Sbjct: 812 LKLTENEISNLRNMLNEKTSELSSLRLENGNLEQKMRDAEMKIHELNNNIKNEALYQSTM 871
Query: 413 TPKDCRVKFAAGVSPIEEYYKEITILSIE--EKNASSLHGE 451
KD + +Y +++ I +K AS L +
Sbjct: 872 ARKDTAGQGRVETDRDRQYMDNVSLDKIRNAQKRASELESQ 912
>SB_44379| Best HMM Match : Peptidase_M28 (HMM E-Value=6.6e-11)
Length = 1098
Score = 33.9 bits (74), Expect = 0.27
Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 12/134 (8%)
Query: 175 FLASASDFEENVTI------PRLLVKKYDALSIYSRL-LDAHV---YVMKHWILDYIVDS 224
F+ + DFE + I P LL D L R+ + AHV + M IL V S
Sbjct: 651 FINISKDFENAIKIRDGQRNPLLLRMINDQLLQIERMFVSAHVVNDWAMNQRILVNDVFS 710
Query: 225 EKFTSIKGEVVPYIVKKQLTKPNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISA 284
T+IK E + + L KG ++K NKG+ D + + I +
Sbjct: 711 NVETAIKSEAEKGLFNNKGITDKGLFNNKGVADKGLFNNKGVADKGLFN--NKGIADKGL 768
Query: 285 YNDHKHGNKGVYFN 298
+N+ + +KG++ N
Sbjct: 769 FNNKRVADKGLFNN 782
>SB_28479| Best HMM Match : Exo_endo_phos (HMM E-Value=0.087)
Length = 466
Score = 32.7 bits (71), Expect = 0.63
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 246 PNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNKGVYFNDTLRCYA 305
PN++ +K K ++ + D +T K EI + D +H K Y D+LRC
Sbjct: 318 PNSVSKKDAYVSKRRQVQLKLRDIQ-DTWLSDKADEIQGFAD-RHDTKRFY--DSLRCIF 373
Query: 306 HIPSKNTFAIRVNTLSSFYLSNNKILSKWQD 336
P+ +F + ++ N I+ +W +
Sbjct: 374 GPPTSGSFPLLSADGATLITDKNMIVERWAE 404
>SB_49380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 32.3 bits (70), Expect = 0.83
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 246 PNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNKGVYFNDTLRCYA 305
PN++ +K K ++ + D +T K EI + D +H K Y D+LRC
Sbjct: 16 PNSVSKKDAYVSKRRQVQLKLRDIQ-DTWLSDKADEIQGFAD-RHDTKRFY--DSLRCIF 71
Query: 306 HIPSKNTFAIRVNTLSSFYLSNNKILSKWQD 336
P+ +F + ++ N I+ +W +
Sbjct: 72 GPPTPGSFPLLSADGATLITDKNMIVERWAE 102
>SB_45951| Best HMM Match : DinI (HMM E-Value=2.2)
Length = 306
Score = 32.3 bits (70), Expect = 0.83
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 246 PNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNKGVYFNDTLRCYA 305
PN++ +K K ++ + D +T K EI + D +H K Y D+LRC
Sbjct: 158 PNSVSKKDAYVSKRRQVQLKLRDIQ-DTWLSDKADEIQGFAD-RHDTKRFY--DSLRCIF 213
Query: 306 HIPSKNTFAIRVNTLSSFYLSNNKILSKWQD 336
P+ +F + ++ N I+ +W +
Sbjct: 214 GPPTPGSFPLLSADGATLITDKNMIVERWAE 244
>SB_54746| Best HMM Match : RVT_1 (HMM E-Value=8.4e-11)
Length = 959
Score = 32.3 bits (70), Expect = 0.83
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 246 PNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNKGVYFNDTLRCYA 305
PN++ +K K ++ + D +T K EI + D +H K Y D+LRC
Sbjct: 384 PNSVSKKDAYVSKRRQVQLKLRDIQ-DTWLSDKADEIQGFAD-RHDTKRFY--DSLRCIF 439
Query: 306 HIPSKNTFAIRVNTLSSFYLSNNKILSKWQD 336
P+ +F + ++ N I+ +W +
Sbjct: 440 GPPTPGSFPLLSADGATLITDKNMIVERWAE 470
>SB_32334| Best HMM Match : UPF0058 (HMM E-Value=4.6)
Length = 311
Score = 32.3 bits (70), Expect = 0.83
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 246 PNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNKGVYFNDTLRCYA 305
PN++ +K K ++ + D +T K EI + D +H K Y D+LRC
Sbjct: 38 PNSVSKKDAYVSKRRQVQLKLRDIQ-DTWLSDKADEIQGFAD-RHDTKRFY--DSLRCIF 93
Query: 306 HIPSKNTFAIRVNTLSSFYLSNNKILSKWQD 336
P+ +F + ++ N I+ +W +
Sbjct: 94 GPPTPGSFPLLSADGATLITDKNMIVERWAE 124
>SB_28837| Best HMM Match : DinI (HMM E-Value=2.2)
Length = 281
Score = 32.3 bits (70), Expect = 0.83
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 246 PNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNKGVYFNDTLRCYA 305
PN++ +K K ++ + D +T K EI + D +H K Y D+LRC
Sbjct: 158 PNSVSKKDAYVSKRRQVQLKLRDIQ-DTWLSDKADEIQGFAD-RHDTKRFY--DSLRCIF 213
Query: 306 HIPSKNTFAIRVNTLSSFYLSNNKILSKWQD 336
P+ +F + ++ N I+ +W +
Sbjct: 214 GPPTPGSFPLLSADGATLITDKNMIVERWAE 244
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 31.5 bits (68), Expect = 1.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 1 MHKILEFQVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWY 42
+H++LEF VV+ GK +RM + S + C+ P LWY
Sbjct: 407 LHELLEFSVVMPRDGKRNRMTVLSSSDTPCMPPT--QGSLWY 446
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 167 DKETERLVFLASASDFEENVTIPRLLVKKYDALSIYSRLLD 207
D ++E+L+ L S+ D + NV + + YD L++Y R L+
Sbjct: 1607 DSKSEKLLKLVSSDDPDANVHVEKYREMGYDHLTVYPRELE 1647
>SB_39987| Best HMM Match : FtsL (HMM E-Value=0.4)
Length = 573
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 11/66 (16%)
Query: 232 GEVVPYIVKKQLTKPNNLVE----KKGTSEKNAEINKGIFDYAIE-TGYERKIREISAYN 286
G++ P+ KKQ + NN+VE GT+ + E G F+ ++ T ERKIR I+ Y+
Sbjct: 61 GKLPPH--KKQ-SNGNNIVEVFQDNAGTTRSSVE---GGFESELKGTERERKIRAITDYD 114
Query: 287 DHKHGN 292
HGN
Sbjct: 115 VENHGN 120
>SB_20040| Best HMM Match : DUF293 (HMM E-Value=2.9)
Length = 646
Score = 29.9 bits (64), Expect = 4.4
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 349 NSEVKTIQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCILMNNVTIKESLA 408
NSE+ T + + T G + SV NC+IE +C+ N E L+
Sbjct: 189 NSEIGTSGV--HLTEGSSDTQGDNLSVSGESWDENCDIEQNNHKVSCMTANGNAQPEDLS 246
Query: 409 QLTMTP 414
+ T+ P
Sbjct: 247 EDTLVP 252
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.5 bits (63), Expect = 5.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 399 NNVTIKESLAQLTMTPKDCRVKFAAGVSPIEEYYKEIT 436
+N T+++ + + KD + + AAG+ + EY +EIT
Sbjct: 1604 DNQTLRQENETVLLENKDLKAQIAAGLKKMAEYEREIT 1641
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 29.5 bits (63), Expect = 5.8
Identities = 19/89 (21%), Positives = 38/89 (42%)
Query: 316 RVNTLSSFYLSNNKILSKWQDLTGSSLFERFHPNSEVKTIQIDDNCTVGEKTIINEKTSV 375
R +++ F N + W L S + +++ IDDNC + +++ T++
Sbjct: 869 RNSSIRYFVFCPNNKYTTWVTLVKSLIDNSTLSTFHIQSPSIDDNCAIALDEVLSGNTTL 928
Query: 376 KNSFIGSNCNIENKVRLTNCILMNNVTIK 404
+ +IG + V+ L N TI+
Sbjct: 929 TDIYIGGGILGDAGVQHIAEALKFNTTIR 957
Score = 29.5 bits (63), Expect = 5.8
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 8/93 (8%)
Query: 316 RVNTLSSFYLSNNKILSKW----QDLTGSSLFERFHPNSEVKTIQIDDNCTVGEKTIINE 371
R +++ SF ++ + W + L +S FH +S IDDNC + +++
Sbjct: 2181 RNSSIRSFLFGSSDKYTTWVRLVKSLKDNSTLSTFHIHSP----SIDDNCAIALAEVLSG 2236
Query: 372 KTSVKNSFIGSNCNIENKVRLTNCILMNNVTIK 404
T++ + +IG + V+ L N TI+
Sbjct: 2237 NTTLTDIYIGGEILGDAGVQYIAEALKFNTTIR 2269
>SB_19619| Best HMM Match : DUF963 (HMM E-Value=9.8)
Length = 130
Score = 29.5 bits (63), Expect = 5.8
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 154 KTKSKPDRDLVCIDKETERLVFLASASDFEENVTIPRLLVKKYDALSIYSRLLDAHVYVM 213
KTK + D V ER VFLAS + + +P L + + +S +RL A Y +
Sbjct: 8 KTKWRTDERRVL----AERTVFLASVCILKTTIMVPELGITTSNVISSGTRLEGATAYFI 63
Query: 214 KHW 216
H+
Sbjct: 64 GHF 66
>SB_20077| Best HMM Match : zf-RanBP (HMM E-Value=0.24)
Length = 346
Score = 29.5 bits (63), Expect = 5.8
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 229 SIKGEVVPYIVKKQLTKPNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDH 288
S K E YI K++ ++ +EKKGT+ N K + Y + +++ +I
Sbjct: 63 SCKNENCSYIFAKKVKSNHDAIEKKGTT--NPTNQKDMMYYRADVLHQKHQNDIVILTFK 120
Query: 289 KHGNKGVYFNDTLRCY 304
+HG T+ CY
Sbjct: 121 RHG-----LGTTVECY 131
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 29.1 bits (62), Expect = 7.7
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 351 EVKTIQ-IDDNCTVGEKTIINEKTSVKNSFIGSNCNIENK 389
+VK I+ ++D C G KT T N F G++ +NK
Sbjct: 1368 KVKIIKHVEDGCMAGSKTFSELFTEASNMFNGNSAECKNK 1407
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,368,814
Number of Sequences: 59808
Number of extensions: 654275
Number of successful extensions: 1385
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1368
Number of HSP's gapped (non-prelim): 25
length of query: 451
length of database: 16,821,457
effective HSP length: 84
effective length of query: 367
effective length of database: 11,797,585
effective search space: 4329713695
effective search space used: 4329713695
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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