GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000300-TA|BGIBMGA000300-PA|IPR005835|Nucleotidyl
transferase
         (451 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            27   1.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            27   1.0  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    27   1.0  
DQ182013-1|ABA56305.1|   75|Anopheles gambiae G(alpha)c protein.       26   2.4  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   5.6  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 70   ALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTDLLV 110
            A ++  LK+K + I +P E D    +S KH S  I+  L V
Sbjct: 1578 AKDQSTLKVKSQSIAVPREGDMVVFHSSKHFSIWIDGHLKV 1618


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 70   ALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTDLLV 110
            A ++  LK+K + I +P E D    +S KH S  I+  L V
Sbjct: 1579 AKDQSTLKVKSQSIAVPREGDMVVFHSSKHFSIWIDGHLKV 1619


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
           protein.
          Length = 1253

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)

Query: 5   LEFQ--VVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPL 44
           ++FQ   V L  G+    PD+G +  + + PVG  P++WY +
Sbjct: 397 IDFQPNAVSLLVGRMKVDPDLGAACGR-IHPVGTGPMVWYQI 437


>DQ182013-1|ABA56305.1|   75|Anopheles gambiae G(alpha)c protein.
          Length = 75

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/71 (19%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 137 TLFFNNGPEEWIELPGPKTKSKPDRDLVCIDKETERLVFLASASDFEENVTIPRLLVKKY 196
           T+   N P  ++++ G +T+ +  +   C D     ++FL S S+F++ +   R   +  
Sbjct: 3   TIRIQNIPFVFVDVGGQRTQRQ--KWTKCFDCSVTSILFLVSTSEFDQVLAEDRKTNRLE 60

Query: 197 DALSIYSRLLD 207
           ++ +I+  +++
Sbjct: 61  ESRNIFDTIVN 71


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 219 DYIVDSEKFTSIKGEVVPYIVKKQLTKPNNL 249
           D   DSE  +S + E++  ++KK L K N+L
Sbjct: 750 DNATDSENSSSKRKELLQRMMKKALQKENSL 780


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 465,960
Number of Sequences: 2123
Number of extensions: 19738
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 5
length of query: 451
length of database: 516,269
effective HSP length: 66
effective length of query: 385
effective length of database: 376,151
effective search space: 144818135
effective search space used: 144818135
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 49 (23.8 bits)