Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000300-TA|BGIBMGA000300-PA|IPR005835|Nucleotidyl
transferase
(451 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g34970.1 68415.m04291 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 48 1e-05
At4g18300.1 68417.m02715 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 43 4e-04
At4g16144.1 68417.m02448 expressed protein 38 0.010
At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon domain-con... 37 0.032
At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family pr... 36 0.042
At1g74910.3 68414.m08687 ADP-glucose pyrophosphorylase family pr... 36 0.073
At1g74910.2 68414.m08686 ADP-glucose pyrophosphorylase family pr... 36 0.073
At1g74910.1 68414.m08685 ADP-glucose pyrophosphorylase family pr... 36 0.073
At3g29680.1 68416.m03741 transferase family protein similar to a... 34 0.17
At3g55590.1 68416.m06173 GDP-mannose pyrophosphorylase, putative... 33 0.51
At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative... 32 0.68
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 31 1.6
At1g23230.1 68414.m02906 expressed protein 31 1.6
At3g10970.1 68416.m01322 haloacid dehalogenase-like hydrolase fa... 30 3.6
At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase fami... 30 3.6
At4g26450.1 68417.m03805 expressed protein 29 6.3
At3g50640.1 68416.m05539 expressed protein 29 6.3
At3g10970.2 68416.m01323 haloacid dehalogenase-like hydrolase fa... 29 6.3
At5g45850.1 68418.m05640 expressed protein contains Pfam profile... 29 8.4
>At2g34970.1 68415.m04291 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q64350
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Rattus norvegicus};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 730
Score = 48.4 bits (110), Expect = 1e-05
Identities = 76/416 (18%), Positives = 173/416 (41%), Gaps = 53/416 (12%)
Query: 8 QVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNI 67
Q ++LA ++ V K LLP+ P++ Y L LE G ++V + +
Sbjct: 26 QAILLADSFATKFRPVTLERPKVLLPIVNVPMIDYTLAWLESAGIEEVFVFCCAHSMQ-V 84
Query: 68 LNALEKCPLKIKYELIV--IPSEEDWGTANSLKHV------SARINTDLLVISGDLITNI 119
+ LEK L+V I S + ++L+++ +++I D +++SGD ++N+
Sbjct: 85 IEYLEKSEWYSHPNLLVRTIESHKSISAGDALRYMYEQQTETSQIQGDFVLVSGDTVSNM 144
Query: 120 NLNDVLNLHR----KHDACVTTLFFNNGPEEWIELPGPKTKSKPDRDLVCIDKETERLV- 174
L D++ HR K + + T+ + +++ D+ + +D T++L+
Sbjct: 145 PLADLIQEHRERKKKDEKAIMTMVIKQSKSSPLT---HQSRLGTDQLFIAVDPLTKQLLH 201
Query: 175 FLASASDFEE-NVTIPRLLVKKYDALSIYSRLLDAHVYVMKHWILDYIVDSEKFTSIKGE 233
+ D +V + + L+ ++ + + + D ++ + +L D+ + ++
Sbjct: 202 YEEDKIDHPSGSVCLEKSLLDTNPSVLVCNDMQDCYIDICSPEVLSLFEDNFDYQHLRRH 261
Query: 234 VVPYIVKKQLTKPNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIREISAYNDHKHGNK 293
V ++ + + IF + I + Y +I +Y+ +K
Sbjct: 262 FVKGVLVDDI------------------MGYKIFTHEIHSSYAGRIDNFRSYDT---VSK 300
Query: 294 GVYFNDTLRCYAHIPSKNTFAIRVNTL--SSFYLSNNKILSKWQDLTGSSLF---ERFHP 348
+ T Y ++P N R L Y +++ + S+ D+ S++ +
Sbjct: 301 DIIQRWT---YPYVPDINFSGNRPLKLGRQGIYKASDVVQSRSADVGASTVIGYGTKIGH 357
Query: 349 NSEVKTIQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCILMNNVTIK 404
++ I + C++G +I + S+I +N IE+ + N I+ + V I+
Sbjct: 358 GDKIMNSVIGNGCSIGSNVVI------EGSYIWNNVTIEDGCEIRNAIVCDGVKIR 407
Score = 33.9 bits (74), Expect = 0.22
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 353 KTIQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCILMNNVTIKE 405
++ + + +G T I + NS IG+ C+I + V + + NNVTI++
Sbjct: 339 RSADVGASTVIGYGTKIGHGDKIMNSVIGNGCSIGSNVVIEGSYIWNNVTIED 391
>At4g18300.1 68417.m02715 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q64350
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Rattus norvegicus};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 709
Score = 43.2 bits (97), Expect = 4e-04
Identities = 36/147 (24%), Positives = 71/147 (48%), Gaps = 15/147 (10%)
Query: 8 QVVVLAAGKGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNI 67
Q ++LA ++ + K LLP+ P++ Y L LE G ++V + S I
Sbjct: 25 QAILLADSFTTQFRSITLERPKVLLPIVNIPMIDYTLAWLESAGIEEVFVFCCAHS-SQI 83
Query: 68 LNALEKCP--LKIKYELIV--IPSEEDWGTANSLKHV------SARINTDLLVISGDLIT 117
++ L+K + L+V I S ++L+++ +++I D +++SGD ++
Sbjct: 84 IDYLKKSEWYTRPNPNLLVRTIVSHNSTSVGDALRYIYEQQTETSQIQGDFVLVSGDTVS 143
Query: 118 NINLNDVLNLHR----KHDACVTTLFF 140
N+ L D++ HR K + + T+ F
Sbjct: 144 NMPLADLIQQHRDRKKKDEKAIMTMVF 170
Score = 36.3 bits (80), Expect = 0.042
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 289 KHGNKGVYFNDTL--RCYAHIPSKNTFAIRVNTLSSFYLSNNKILSKWQ-------DLTG 339
+H G+ +D + + + H + +A R++ L S+ + I+ +W D +G
Sbjct: 250 RHFVNGLLVDDIMGYKIFTHEIQSSCYAARIDNLRSYDTVSKDIIQRWTYPYVPNIDFSG 309
Query: 340 S---SLFER--FHPNSEVK--TIQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRL 392
+ L R + + V+ T + + +G T I + NS IG+ C I + V +
Sbjct: 310 NRPVKLGRRGIYRASDAVQSHTADVGASTVIGYGTKIGNGGKIYNSVIGNGCCIGSNVVI 369
Query: 393 TNCILMNNVTIKE 405
+ NNVTI++
Sbjct: 370 QGSYIWNNVTIED 382
>At4g16144.1 68417.m02448 expressed protein
Length = 390
Score = 38.3 bits (85), Expect = 0.010
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 69 NALEKCPLKIKYELIV-IPSEEDWGTANSLKHVSARINTDLLVISGDLITNINLNDVLNL 127
N L++ + K E+ V PS DWG+A++ + A ++ ++GD LN VL+L
Sbjct: 196 NGLKRQMVAPKSEIKVQYPSNTDWGSADNSGLIEAGPSSSSASLNGDSQEVSTLNSVLSL 255
Query: 128 H----RKHDACVTTLFFNNGPEEWIELPGPKTKSKP 159
++H V + F ++ E+ + G K S P
Sbjct: 256 DDGRWQRHSEAVNSQFISDATEDPFQFVGMKQPSPP 291
>At3g02270.1 68416.m00208 eIF4-gamma/eIF5/eIF2-epsilon
domain-containing protein similar to SP|Q13144
Translation initiation factor eIF-2B epsilon subunit
(eIF-2B GDP-GTP exchange factor) {Homo sapiens};
contains Pfam profile PF02020:
eIF4-gamma/eIF5/eIF2-epsilon
Length = 676
Score = 36.7 bits (81), Expect = 0.032
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 350 SEVKTIQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCILMNNVTIKE 405
+++ + + + +G T I T + NS IG+ C+I + V + + NNVT+++
Sbjct: 318 TQLPSAHVGASYVIGHATNIGSGTKILNSVIGNGCSIGSNVVIQGSYIWNNVTVED 373
>At2g04650.1 68415.m00474 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 406
Score = 36.3 bits (80), Expect = 0.042
Identities = 27/136 (19%), Positives = 66/136 (48%), Gaps = 8/136 (5%)
Query: 10 VVLAAG--KGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKI-GFQDVMIVVLDEDKSN 66
V++ G KG+R + + K L+P+ P++ +P++ +KI + ++ E++
Sbjct: 9 VIMVGGPTKGTRFRPLSFNTPKPLIPLAGQPMIHHPISACKKISNLAQIFLIGFYEEREF 68
Query: 67 ILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTD----LLVISGDLITNINLN 122
L + ++K + + ++ G+A +L + RI + + +++ D+ + L
Sbjct: 69 AL-YVSSISNELKIPVRYLKEDKPHGSAGALYYFRDRIMEEKPSHVFLLNCDVCCSFPLQ 127
Query: 123 DVLNLHRKHDACVTTL 138
+L+ HR++ T L
Sbjct: 128 GILDAHRRYGGIGTML 143
>At1g74910.3 68414.m08687 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 387
Score = 35.5 bits (78), Expect = 0.073
Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 10 VVLAAG--KGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKI-GFQDVMIVVLDEDKSN 66
V++ G KG+R + ++ K L P+ P++ +P++ ++I + +V E++
Sbjct: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQIYLVGFYEEREF 71
Query: 67 ILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTD----LLVISGDLITNINLN 122
L + ++K + + ++ G+A L H I D + +++ D+ + L
Sbjct: 72 AL-YVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLNCDVCCSFPLP 130
Query: 123 DVLNLHRKHDACVTTLFFNNGPE 145
+L HR + T L PE
Sbjct: 131 KMLEAHRGYGGIGTLLVIKVSPE 153
>At1g74910.2 68414.m08686 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 415
Score = 35.5 bits (78), Expect = 0.073
Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 10 VVLAAG--KGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKI-GFQDVMIVVLDEDKSN 66
V++ G KG+R + ++ K L P+ P++ +P++ ++I + +V E++
Sbjct: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQIYLVGFYEEREF 71
Query: 67 ILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTD----LLVISGDLITNINLN 122
L + ++K + + ++ G+A L H I D + +++ D+ + L
Sbjct: 72 AL-YVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLNCDVCCSFPLP 130
Query: 123 DVLNLHRKHDACVTTLFFNNGPE 145
+L HR + T L PE
Sbjct: 131 KMLEAHRGYGGIGTLLVIKVSPE 153
>At1g74910.1 68414.m08685 ADP-glucose pyrophosphorylase family
protein contains Pfam profile PF00483: Nucleotidyl
transferase; low similarity to mannose-1-phosphate
guanylyltransferase [Hypocrea jecorina] GI:3323397
Length = 415
Score = 35.5 bits (78), Expect = 0.073
Identities = 30/143 (20%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 10 VVLAAG--KGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKI-GFQDVMIVVLDEDKSN 66
V++ G KG+R + ++ K L P+ P++ +P++ ++I + +V E++
Sbjct: 12 VIMVGGPTKGTRFRPLSLNIPKPLFPIAGQPMVHHPISACKRIPNLAQIYLVGFYEEREF 71
Query: 67 ILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTD----LLVISGDLITNINLN 122
L + ++K + + ++ G+A L H I D + +++ D+ + L
Sbjct: 72 AL-YVSAISNELKVPVRYLREDKPHGSAGGLYHFRNLIMEDSPSHIFLLNCDVCCSFPLP 130
Query: 123 DVLNLHRKHDACVTTLFFNNGPE 145
+L HR + T L PE
Sbjct: 131 KMLEAHRGYGGIGTLLVIKVSPE 153
>At3g29680.1 68416.m03741 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 451
Score = 34.3 bits (75), Expect = 0.17
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 16 KGSRMPDVGGSVSKCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNILNALEKCP 75
K SR+ V SV +LP+ + +LW LN +E++ F + D S+IL LE+
Sbjct: 7 KISRVSLVTNSVEPLVLPLTFFDLLWLKLNPIERVTFYKLTESSRDSFFSSILPKLEQSL 66
Query: 76 LKIKYELIVIPSEEDWGTANSLKHV 100
+ + + W + H+
Sbjct: 67 SLVLSHFLPLSGHLKWNPQDPKPHI 91
>At3g55590.1 68416.m06173 GDP-mannose pyrophosphorylase, putative
strong similarity to GDP-mannose pyrophosphorylase from
Arabidopsis thaliana [GI:3598958], Pichia angusta
[GI:7331158]; contains Pfam profile PF00483 Nucleotidyl
transferase
Length = 364
Score = 32.7 bits (71), Expect = 0.51
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 355 IQIDDNCTVGEKTIINEKTSVKNSFIGSNCNIENKVRLTNCILMNNVTIK 404
+ +D+ +GE +I N IG C +E+ VRL++C +M V +K
Sbjct: 258 VLVDETAEIGEGCLIGP-----NVAIGPGCVVESGVRLSHCTVMRGVHVK 302
>At4g30570.1 68417.m04338 GDP-mannose pyrophosphorylase, putative
similar to GDP-mannose pyrophosphorylase [Arabidopsis
thaliana] GI:3598958; contains Pfam profile PF00483:
Nucleotidyl transferase
Length = 331
Score = 32.3 bits (70), Expect = 0.68
Identities = 21/109 (19%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Query: 29 KCLLPVGPYPVLWYPLNMLEKIGFQDVMIVVLDEDKSNILNALEKCPLKIKYELIVIPSE 88
K L+ G P++ + + L+ G +V++ + + +LN +++ K++ ++
Sbjct: 3 KPLVDFGNKPMILHQIEALKGAGVTEVVLAINHQQPEVMLNFVKEYEKKLEIKITFSQET 62
Query: 89 EDWGTANSLKHVSARI----NTDLLVISGDLITNINLNDVLNLHRKHDA 133
E GTA L ++ V++ D+I L +++ H+ + A
Sbjct: 63 EPLGTAGPLALARDKLVDESGQPFFVLNSDVICEYPLLEMIEFHKTNRA 111
Score = 31.5 bits (68), Expect = 1.2
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 360 NCTVGEKTIINEKTSV-KNSFIGSNCNIENKVRLTNCILMNNVTIKE 405
N V E +I E + + IG C I++ VRL C +M V IKE
Sbjct: 235 NVLVHESAVIGEGCLIGPDVVIGPGCVIDSGVRLFGCTVMRGVWIKE 281
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 31.1 bits (67), Expect = 1.6
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 4 ILEFQ-VVVLAAGKGSRMPDVGGSVSKCLLPVG--PY----PVLWYP-LNMLEKIGFQDV 55
ILE Q V L A G+R+ VG S LP+ P+ P L+ P LN+L+ +G DV
Sbjct: 4112 ILELQKVAFLPAANGTRL--VGASSLFVRLPINLSPFAFELPSLYLPFLNILKDLGLNDV 4169
Query: 56 MIVVLDEDKSNILNALEK 73
+ V +D IL+ L+K
Sbjct: 4170 LSVAAAKD---ILSKLQK 4184
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 31.1 bits (67), Expect = 1.6
Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 173 LVFLASASDFEENVTIPRLLVKKYDALSIYSRLLDAHVYVMKHWILDYIVDSEKFTSIKG 232
L F+ + D E T+ + ++ DA++++ +LD H++ + + S+ ++
Sbjct: 316 LQFIENIPDDEALFTLIMEIHRRRDAMAMHMLMLDQHLHCPSFG--THRIVSQITANVPP 373
Query: 233 EVVPYIVKKQLTKPNNLVEKKGTSEKNAEINKGIFDY 269
E VP++ +T P+ L E + I KG D+
Sbjct: 374 EAVPHLRHSPITYPSVLGEPLYGEDLAMSIPKGSLDW 410
>At3g10970.1 68416.m01322 haloacid dehalogenase-like hydrolase
family protein low similarity to genetic modifier [Zea
mays] GI:10444400; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 365
Score = 29.9 bits (64), Expect = 3.6
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 58 VVLDEDKSNILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTD 107
VV + D+ N++NALE+ L+ ++ +V SEED + + + +SA + D
Sbjct: 228 VVSNLDRKNMINALERMGLQKYFQAVV--SEEDGMESIAHRFLSAAVKLD 275
>At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase family
protein similar to PABA synthase from Streptomyces
griseus [SP|P32483], Streptomyces pristinaespiralis
[gi:1575336]; contains Pfam profiles PF00425:
chorismate binding enzyme, PF00117: glutamine
amidotransferase class-I, PF04715: Anthranilate synthase
component I, N terminal region
Length = 919
Score = 29.9 bits (64), Expect = 3.6
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 121 LNDVLNLHRKHDACVTTLFFNNGPEEWIELPGPKTKSKPDRDLVCIDKETERLVFLASAS 180
L+DV L + T F N+ E+ I L G T+ D+ L ID + F+ S
Sbjct: 584 LDDVYILSLYEEGTAETSFLNDTEEKLISLMGLSTRKLEDQTLPVIDSSQSKTSFVPDKS 643
>At4g26450.1 68417.m03805 expressed protein
Length = 1248
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 42 YPLNMLEKIGFQDVMIVVLDEDKSNILNALEKCPLKIKYELIVIPSEEDWG--TANSLKH 99
Y + +GF M + +D+D+S+ + + + P I+YE +I S + NS KH
Sbjct: 856 YDSRFVAGVGFSAGMDLEIDDDRSSKSSTVARAPKVIRYEKPMISSGQGGNIRVENSKKH 915
>At3g50640.1 68416.m05539 expressed protein
Length = 166
Score = 29.1 bits (62), Expect = 6.3
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 8/149 (5%)
Query: 229 SIKGEVVPYIVKKQLTKPNNLVEKKGTSEKNAEINKGIFDYAIETGYERKIR-EISAYND 287
S E V +K K NN+ + S +A+ + DY++ E ++ +I + +
Sbjct: 17 SFSNEFVEIRSEKSNAKSNNINSRSSFSMPSADFAFSVTDYSMIPADEIFLKGKILPFKE 76
Query: 288 HKHGNKGVYFNDTLRCYAHIPSKNTFAIRVNTLSSFYLSNNKILSKWQDLTGSSLFERFH 347
H ++ + + NTF++R LSS S W++L G +R H
Sbjct: 77 TSHVHRTLGEELLTEEEGSMVDGNTFSLRPILLSSSSFSTK---GTWRELLG---LKRTH 130
Query: 348 PNSEVKTIQIDDNCTVGEKTIINEKTSVK 376
S+ KT ++++ + II+ + +
Sbjct: 131 VRSK-KTDKVNEEVLSQDHKIISGNVATR 158
>At3g10970.2 68416.m01323 haloacid dehalogenase-like hydrolase
family protein low similarity to genetic modifier [Zea
mays] GI:10444400; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 365
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Query: 58 VVLDEDKSNILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTD 107
VV + D+ N++NALE+ L+ ++ +V SEED + + + +SA + D
Sbjct: 228 VVSNLDRKNMINALERMGLQKYFQAMV--SEEDGMESIAHRFLSAAVKLD 275
>At5g45850.1 68418.m05640 expressed protein contains Pfam profile:
PF05097 protein of unknown function (DUF688)
Length = 444
Score = 28.7 bits (61), Expect = 8.4
Identities = 19/55 (34%), Positives = 28/55 (50%)
Query: 54 DVMIVVLDEDKSNILNALEKCPLKIKYELIVIPSEEDWGTANSLKHVSARINTDL 108
DV++ D S L A E LK+K E + +E+ + +L+ VS IN DL
Sbjct: 137 DVILEYRDLIMSRFLPAAEAISLKMKKEASRVKAEKKKKQSIALQRVSMAINQDL 191
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,003,340
Number of Sequences: 28952
Number of extensions: 482989
Number of successful extensions: 1210
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1189
Number of HSP's gapped (non-prelim): 37
length of query: 451
length of database: 12,070,560
effective HSP length: 83
effective length of query: 368
effective length of database: 9,667,544
effective search space: 3557656192
effective search space used: 3557656192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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