Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000299-TA|BGIBMGA000299-PA|undefined
         (286 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      32   0.006
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      32   0.006
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    27   0.16 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   2.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.6  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 199 SACLSCATPAVMDLEEPGTIPALPALSSRSPGVGAESLNPKEDGDHLCYPRHPIPHQKDS 258
           S   S  +P  M L  P T  A P++S  SP +    L P E  D +  P  P PH +  
Sbjct: 688 SGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFD-VKLPPPPHPHHQPP 746

Query: 259 RYIISNN 265
           R  +  N
Sbjct: 747 RNPVGTN 753


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 31.9 bits (69), Expect = 0.006
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 199 SACLSCATPAVMDLEEPGTIPALPALSSRSPGVGAESLNPKEDGDHLCYPRHPIPHQKDS 258
           S   S  +P  M L  P T  A P++S  SP +    L P E  D +  P  P PH +  
Sbjct: 580 SGLSSLTSPGGMVLPSPSTSVASPSVSVASPYMLQSPLTPHEAFD-VKLPPPPHPHHQPP 638

Query: 259 RYIISNN 265
           R  +  N
Sbjct: 639 RNPVGTN 645


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 184 GEPRAAAILRKIHRDSACLSCATPAVMDLEEPGTIPALPALSSRSPGVGAESLNPKEDGD 243
           G PR       +  D   L C  P   D + P TIP  P        +     NPK    
Sbjct: 179 GYPRLQRCPAMLVFDRRSLRCVVPPTEDCDVPSTIPPPPPEEDDDSNIPQN--NPKNKQH 236

Query: 244 HLCYPRHPIP 253
           +   P   IP
Sbjct: 237 NFNLPPGAIP 246


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 117 QGDFEKRILTAYDKFNNQE 135
           +GD +  + TA+DKF N +
Sbjct: 537 RGDLQTYLRTAWDKFTNMQ 555


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 117 QGDFEKRILTAYDKFNNQEMIWQKAIDDLFRGLNEKADYVQVTSLRDEIQKYLNM 171
           QGD  + +   Y  FN+   + Q    DL +      D  ++ SL  E + ++N+
Sbjct: 87  QGDIHRDLTEVYFSFNSVRNVQQHTFADLIQLEQIHLDDNRIESL--ERRAFMNL 139


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,803
Number of Sequences: 317
Number of extensions: 2580
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 286
length of database: 114,650
effective HSP length: 56
effective length of query: 230
effective length of database: 96,898
effective search space: 22286540
effective search space used: 22286540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)