Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000299-TA|BGIBMGA000299-PA|undefined
         (286 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   0.77 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   1.8  
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    21   9.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 120 FEKRILTAYDKFNNQEMIWQKAIDDLFRGLNEKADY-VQV 158
           +E R    YD   N  +I    +   F+GL    DY +QV
Sbjct: 456 YEVRCYPRYDDATNATVIQTSELSATFKGLKPSTDYAIQV 495


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 2   TNYQEQLTQMQHDLESGLDNMAETLANAGGDTTAVTELNG 41
           TN+ E+ T   H   S +D+    +   GG TT+     G
Sbjct: 258 TNHNERSTPRSHAKPSLIDDEPTEVTIGGGGTTSSRRTTG 297


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 239 KEDGDHLCYPRHPIPHQKDSRYIISNNVDIQMSVEATCK 277
           + DG+  C       ++KD RY   +NV+ +   E T +
Sbjct: 246 RNDGERSCSRDRSREYKKDRRYDQLHNVEEKHLRERTSR 284


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 15/45 (33%), Positives = 19/45 (42%)

Query: 205 ATPAVMDLEEPGTIPALPALSSRSPGVGAESLNPKEDGDHLCYPR 249
           AT A       G++PA PA S  S    + S    ED + L   R
Sbjct: 228 ATMATTSTPGSGSLPASPADSGVSDVESSTSSGGNEDANLLLKAR 272


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,118
Number of Sequences: 429
Number of extensions: 3112
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 286
length of database: 140,377
effective HSP length: 57
effective length of query: 229
effective length of database: 115,924
effective search space: 26546596
effective search space used: 26546596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)