Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000299-TA|BGIBMGA000299-PA|undefined
(286 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 30 0.33
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc... 30 0.33
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 28 1.3
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 28 1.3
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 27 2.3
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 27 3.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.1
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 27 4.1
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 27 4.1
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 5.4
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 25 9.4
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 9.4
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 30.3 bits (65), Expect = 0.33
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 3/88 (3%)
Query: 127 AYDKFNNQEMIWQKAIDDLFRGL--NEKADYVQVTSLRDEIQKYLNMFDSRINAMSEILG 184
A+ F + E +W + + D F L +EK + TS R Q + + + IL
Sbjct: 289 AHSPFKDLE-VWTEVLQDTFLPLFDSEKLRFATATSTRFSPQGFEKFYSNYDYYKERILL 347
Query: 185 EPRAAAILRKIHRDSACLSCATPAVMDL 212
P+ + +I R C++ TP D+
Sbjct: 348 RPQVISNHPEIIRRLGCIAMNTPVEADI 375
>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 609
Score = 30.3 bits (65), Expect = 0.33
Identities = 16/71 (22%), Positives = 31/71 (43%)
Query: 25 TLANAGGDTTAVTELNGHFSNLQFDLENMFLSQKELNDNQNKLSVDLEGLWQPIEVLRST 84
T AG + + S + +L+N+ + Q L++ +++ VD LWQ R
Sbjct: 152 TRKKAGSQPVEESNTSLDMSTISSELQNIRIQQMNLSNELSRIQVDNAALWQENMENRER 211
Query: 85 KADREEVADAL 95
+ +E D +
Sbjct: 212 QRRHQETIDKI 222
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 195 IHRDSACLSCATPAVMDLEEPGTIPALPALSSRSPGV 231
I R S+C++C+T ++ P P L SS +P V
Sbjct: 114 ISRKSSCVTCSTVLPLEFSVPDVQPRLYTNSSTNPDV 150
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 70 DLEGLWQPIEVLRSTKADRE-----EVADALRDKAGIAALNGLVSLQQFDAVQGDFEKRI 124
D GL PIE ++ KA+ E E+ +D A A L+ Q+ AV GD+ R
Sbjct: 125 DCHGL--PIES-KAIKANAERKSSLEIRKIAKDFANSAVQEQLMMFQRM-AVMGDWPSRY 180
Query: 125 LTAYDKFNNQEM 136
+T DKF E+
Sbjct: 181 ITMSDKFEIAEL 192
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 139 QKAIDDLFRGLNEKADYVQVTSLRDEIQKYLNMFDSR 175
+KAIDD + N+K D V + R E +K L +S+
Sbjct: 139 RKAIDDFYENFNDKRDKV-IAKSRKEQEKLLEENESK 174
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 3.1
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 24 ETLANAGGDTTAVTELNGHF----SNLQFDLENMFLSQKELNDNQNK-LSVDLEGLWQPI 78
+TL G +T ++TEL G F S + L ++ + K L +D EG ++P+
Sbjct: 132 DTLLQGGVETGSITELFGEFRTGKSQICHTLAVTCQLPIDMGGGEGKCLYIDTEGTFRPV 191
Query: 79 EVLRSTKADR-----EEVADALRDKAGIAALNGLVSLQQ 112
+L ADR EEV D + A + L LQQ
Sbjct: 192 RLL--AVADRYGLNGEEVLDNVAYARAYNADHQLELLQQ 228
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 3.1
Identities = 29/169 (17%), Positives = 68/169 (40%), Gaps = 6/169 (3%)
Query: 1 MTNYQEQLTQMQHDLESGLDNMAETLANAGGDTTAVTELNGHFSNLQFDLENMFLSQKEL 60
+ N +EQ+ + + ES ++ + + + L+ +L+ + + L
Sbjct: 492 LNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGELQTEISNSEHL 551
Query: 61 NDNQNKLSVDLEGLWQPIEVLRSTKADREEVADALRDKAGIAALNGLVSLQQFDAVQGDF 120
+ + L+ + E L +K + + +A ++K + + + Q F ++ F
Sbjct: 552 SSQLSTLAAEKEAAVATNNELSESKNSLQTLCNAFQEKLAKSVMQLKENEQNFSSLDTSF 611
Query: 121 EKRILTAYDKFNNQEMIWQKAIDDLFRGLN----EKADYVQVTS-LRDE 164
K++ ++ + N K + D L E+A++ Q S L DE
Sbjct: 612 -KKLNESHQELENNHQTITKQLKDTSSKLQQLQLERANFEQKESTLSDE 659
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 25 TLANAGGDTTAVTELNGHFSNLQFD 49
T +N+ G+TTA+++L GH +++ D
Sbjct: 841 TTSNSLGNTTALSQLKGHINSVIVD 865
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 142 IDDLFRGLNEKADYVQVTSLRDEIQKYLNMFDSRINAMSEILGEP 186
+ D+ LN+ +D V V L ++ KYL + IN + +P
Sbjct: 1003 LPDVVANLNQTSDSVLVKELAKDLLKYLKVPQGPINEHKSPISKP 1047
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 131 FNNQEMIWQKAIDDLFRGLNEKADYVQVTSLRDEIQKYLNMFDSRINAMSEILGEPRAAA 190
FN ++++ I L + L+ ++ DEI+ Y + DS + +S++ P+ +
Sbjct: 560 FNMDPKVYEELILQLDKALDFSLTVENNVNV-DEIENYEEVRDSILKKLSDLRDRPKRSE 618
Query: 191 ILRKIHRDSACL 202
R H D A +
Sbjct: 619 KPRIYHLDVASM 630
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 133 NQEMIWQKAIDDLFRGLNEKA-DYVQVTSLRDEIQKYLNMFDSRINAMSEIL 183
N +++ ++ L G E D V + S R I++Y+ +FD + ++ L
Sbjct: 21 NGQILLHPSVQPLHPGERELINDIVSLASKRKRIERYIEIFDEDLIQQNQFL 72
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 87 DREEVADALRDKAGIAALNGLVSLQQ-FDAVQGDFEKRILTAYDKFNNQEMIWQKAIDDL 145
D +E+ ++L + + + N +L FD ++ F+K A FN + ++K+I +L
Sbjct: 44 DTKEIDNSLSENSNSDSENLAKTLSPIFDNLESVFKKGTDVAILDFNQCTLKFRKSIVEL 103
Query: 146 FRGLNEKADYVQVTSLRDEI 165
+ N +V+V +I
Sbjct: 104 AKARNMLLMFVEVVCTNQKI 123
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,268,992
Number of Sequences: 5004
Number of extensions: 51771
Number of successful extensions: 171
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 163
Number of HSP's gapped (non-prelim): 15
length of query: 286
length of database: 2,362,478
effective HSP length: 72
effective length of query: 214
effective length of database: 2,002,190
effective search space: 428468660
effective search space used: 428468660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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