Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000298-TA|BGIBMGA000298-PA|IPR002557|Chitin binding
Peritrophin-A
         (356 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    34   0.001
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    34   0.001
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    29   0.051
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    29   0.068
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    28   0.089
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.21 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   4.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   4.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.9  

>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 35  GYYADLETSCQMFHVCTVGQQDEPMDIKFLCLNGTVFDQETRVCERVDEVDCTKSEK 91
           G +AD E+ C +F  C  G+       ++ C  G  +D+E RVC   D+V   K+E+
Sbjct: 100 GIFAD-ESKCDVFWNCWNGEAS-----RYQCSPGLAYDREARVCMWADQVPECKNEE 150


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 34.3 bits (75), Expect = 0.001
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 35  GYYADLETSCQMFHVCTVGQQDEPMDIKFLCLNGTVFDQETRVCERVDEVDCTKSEK 91
           G +AD E+ C +F  C  G+       ++ C  G  +D+E RVC   D+V   K+E+
Sbjct: 100 GIFAD-ESKCDVFWNCWNGEAS-----RYQCSPGLAYDREARVCMWADQVPECKNEE 150


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 29.1 bits (62), Expect = 0.051
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 44  CQMFHVCTVGQQDEPMDIKFLCLNGTVFDQETRVCERVDEVDCTKSEK 91
           C  ++ C  G+  E     F C  GTVF  ++ +C+  +  D  K +K
Sbjct: 488 CDKYYRCVHGKPTE-----FACRPGTVFHTQSNICDWPEHADREKCKK 530


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 0.068
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 42  TSCQMFHVCTVGQQDEPMDIKFLCLNGTVFDQETRVCERVDEVDC 86
           + C +++ C V    + + I+  C +G V+D E  +C     V C
Sbjct: 453 SDCSVYYTC-VSDGSKLVSIQRKCNHGLVYDLELNICNYPQVVQC 496


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 0.089
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 35  GYYADLETS-CQMFHVCTVGQQDEPMDIKFLCLNGTVFDQETRVCERVDEV---DCTKSE 90
           GY+A  E   C  F+ C  G+ +        C NG V++ +  +C   DE     C+  E
Sbjct: 112 GYFAHEEPHICDKFYYCVDGKYN-----MITCPNGLVYNDKAGICSWPDEAKKKGCSSEE 166

Query: 91  KF 92
            F
Sbjct: 167 VF 168


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 0.21
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 22  PETNFTCAGKVIGGYYADLETSCQMFHVCTVGQQDEPMDIKFLCLNGTVFDQETRVCERV 81
           P  + T       GY  D +  C +F+ C +      + ++  C  G VFD+E   C+  
Sbjct: 413 PSRDLTTTLCTKAGYVRDPD-DCSIFYYC-LAYNGGFVPLEQRCNAGLVFDEEKLWCDYP 470

Query: 82  DEVDC 86
           + V C
Sbjct: 471 EVVKC 475


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 295 DTGLPIASFKAPLQEISVPLASSKTTDATMPTLAA 329
           D  +P+A   APL    V    S TT AT   + A
Sbjct: 83  DPEIPVAPEPAPLASPLVQEPGSSTTSATSGAVMA 117


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 98  ELYGSTAPPIIQPEQNKSETTNNKREN 124
           E Y    PPI +P    S  +N+  EN
Sbjct: 27  EPYPPRCPPIYEPSCQYSPVSNSDSEN 53


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 290  KPDKMDTGLPIASFKAPLQEISVPLASSKTTDATMPTLA 328
            +P K  T  P AS  A +        ++   D T+P LA
Sbjct: 1292 QPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLA 1330


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,707
Number of Sequences: 317
Number of extensions: 3596
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 10
length of query: 356
length of database: 114,650
effective HSP length: 58
effective length of query: 298
effective length of database: 96,264
effective search space: 28686672
effective search space used: 28686672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)