Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000298-TA|BGIBMGA000298-PA|IPR002557|Chitin binding
Peritrophin-A
         (356 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    28   0.14 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.76 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   3.0  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   7.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   7.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 27.9 bits (59), Expect = 0.14
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 64   LCLNGTVFDQETRVCERVDE-VDCTKSEKFYSLNLELYGSTAPPIIQPEQNKSETTNNKR 122
            + L     DQ   V + +   +DC+   ++Y L ++   +  PP +     ++   N+K 
Sbjct: 942  VALTAATCDQNKAVKKHITTTIDCSTQSEYYELEVKDQKNGKPPSVVSRSTQTSANNDKD 1001

Query: 123  EN 124
             N
Sbjct: 1002 TN 1003


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.4 bits (53), Expect = 0.76
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 135 TTAHNKSPQQTHDIPDSTEDPVQDITKDDHRYTQSISSTYSALPPSGNDELTEARHGSIM 194
           TT  N S   T++  ++++  +   +       +S+       PP G  ELTEA H ++ 
Sbjct: 718 TTTGNVSYLTTNNTSNNSQLQIPRASLVSTTSVKSLRLEGDETPPYGM-ELTEAEHYALY 776

Query: 195 TPTLSVVTQEQFAEL 209
           T      T  +F E+
Sbjct: 777 TAMAPHATASEFDEM 791


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 111 EQNKSETTNNKRENENDPSIDEIYTTAHNKSPQQTHDIPDSTEDP-VQDITKDDHRYTQS 169
           E+   E TN++  ++ D S D +       S  Q  D+    E P V D       Y +S
Sbjct: 298 EEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYLES 357


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 111 EQNKSETTNNKRENENDPSIDEIYTTAHNKSPQQTHDIPDSTEDP-VQDITKDDHRYTQS 169
           E+   E TN++  ++ D S D +       S  Q  D+    E P V D       Y +S
Sbjct: 213 EEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYLES 272


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 111 EQNKSETTNNKRENENDPSIDEIYTTAHNKSPQQTHDIPDSTEDP-VQDITKDDHRYTQS 169
           E+   E TN++  ++ D S D +       S  Q  D+    E P V D       Y +S
Sbjct: 532 EEGNVEETNSEETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDCKVGVRTYLES 591


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 102 STAPPIIQPEQNKSETTNNKRENENDPSIDEIY 134
           S  P II    NK+   NN   N N  +  ++Y
Sbjct: 76  SREPKIISSLSNKTIHNNNNYNNNNYNNYKKLY 108


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)

Query: 105 PPIIQPEQNKSETTN-NKRENENDP 128
           PPI+   QN ++TTN ++   ++DP
Sbjct: 641 PPIMPRVQNATDTTNFDEYPPDSDP 665


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.128    0.357 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,815
Number of Sequences: 429
Number of extensions: 4237
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 356
length of database: 140,377
effective HSP length: 58
effective length of query: 298
effective length of database: 115,495
effective search space: 34417510
effective search space used: 34417510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)