GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000296-TA|BGIBMGA000296-PA|undefined
         (234 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0353 + 16915618-16916934                                         30   1.4  
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467           29   2.4  
03_01_0038 - 340564-341108,341214-341463,341546-341649,341728-34...    28   5.7  
04_03_0677 - 18600568-18600609,18601241-18601307,18601511-186015...    28   7.5  
10_08_0842 - 20954712-20957738                                         27   9.9  
06_01_0475 + 3375757-3375800,3375898-3376168,3376252-3376440,337...    27   9.9  
03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393     27   9.9  

>09_04_0353 + 16915618-16916934
          Length = 438

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 70  VLLTSIIKQKASVACFLAEGDGSGRTLVGVNMCLPQEKGRFVDHKPPKTKAGLLSLRMLA 129
           VLL +++    + A     G G   TL  V+      K + +     +++A + +L+ LA
Sbjct: 7   VLLAALVSVDVAAA-HSGGGFGFKATLTHVDANAGYTKAQLLSRAVARSRARVAALQSLA 65

Query: 130 ---EAMKVTAIYDKYDVNEYLMGAGLSVTPEY 158
              +A+    I  ++   EYLM  G+   P Y
Sbjct: 66  TAADAITAARILLRFSEGEYLMDVGIGSPPRY 97


>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
          Length = 421

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 125 LRMLAEAMKVTAIYDKYDVNEYLMGA---GLSVTPEYRGLGIAVELLR 169
           +RM+      +    K   N+++  A   GL V+P +R LGIA EL+R
Sbjct: 97  VRMVTRGSSSSLRKTKTKTNKFVKAACLLGLRVSPSHRRLGIATELVR 144


>03_01_0038 -
           340564-341108,341214-341463,341546-341649,341728-343255,
           343995-344056,344578-344728
          Length = 879

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 86  LAEGDGSGRTLVGVNMCLPQEKGRFVDHKPPKTKAGLLSLRMLAE 130
           L EG   GR   G+ +  P+     ++H+ PKT     SL ++++
Sbjct: 617 LIEGAEPGREHAGMLLSYPENVVESLEHQEPKTPRSSASLELISQ 661


>04_03_0677 -
           18600568-18600609,18601241-18601307,18601511-18601596,
           18602411-18602471,18602472-18602573,18602646-18602750,
           18604031-18604109,18604804-18604963
          Length = 233

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 40  EFMLGNYIREDVWWSTAGT 58
           +F  G+Y ++ +WWST GT
Sbjct: 194 DFDKGSYNKDMIWWSTEGT 212


>10_08_0842 - 20954712-20957738
          Length = 1008

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 171 RINLARELRFRVTGGIFTGQRAQNSAEKAD 200
           R+ LA +LR     G+F+  RAQ+ AE+ +
Sbjct: 344 RLGLAEQLRRNTGQGVFSFDRAQDMAERLE 373


>06_01_0475 +
           3375757-3375800,3375898-3376168,3376252-3376440,
           3376816-3376989,3378039-3378218,3378565-3378719,
           3379509-3379599,3380023-3380186,3380791-3380845,
           3380944-3381066,3381160-3381255,3381706-3381833,
           3382407-3382466,3382607-3382896,3383127-3383237,
           3383318-3383395,3383487-3383659,3384192-3384296,
           3385017-3385112
          Length = 860

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 42  MLGNYIREDVWWSTAGTAQNMDAVQEYRV 70
           + GNY+++DVW +      N   +Q Y V
Sbjct: 441 LAGNYVKDDVWHALIVLISNASELQGYSV 469


>03_05_0811 - 27867228-27867701,27868313-27868497,27869123-27869393
          Length = 309

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)

Query: 169 RARINLARELRFRVTGGIFTGQRA--QNSAEKADME 202
           RAR++ ARELR R+  G F G RA  ++S E+A +E
Sbjct: 96  RARLDKARELRERLGLGSF-GARAELESSLERAKLE 130


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,593,651
Number of Sequences: 37544
Number of extensions: 259240
Number of successful extensions: 462
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 8
length of query: 234
length of database: 14,793,348
effective HSP length: 80
effective length of query: 154
effective length of database: 11,789,828
effective search space: 1815633512
effective search space used: 1815633512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)