GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000296-TA|BGIBMGA000296-PA|undefined
         (234 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2784| Best HMM Match : UCR_14kD (HMM E-Value=1.5)                   31   0.82 
SB_30824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_34320| Best HMM Match : Ponericin (HMM E-Value=1.2)                 28   7.6  
SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)                  28   7.6  
SB_32862| Best HMM Match : CaM_binding (HMM E-Value=1.4)               28   7.6  
SB_20028| Best HMM Match : Ponericin (HMM E-Value=2.9)                 28   7.6  
SB_2167| Best HMM Match : Ponericin (HMM E-Value=3.2)                  28   7.6  

>SB_2784| Best HMM Match : UCR_14kD (HMM E-Value=1.5)
          Length = 413

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 51  VWWSTAGTAQNMDAVQEYRVLLTSIIKQKASVACFLAEGDGSGRTLVGVNMCLPQEKGRF 110
           V W T    +N+D     R+ +  ++  +A+V C        GR L+GV  C   E+   
Sbjct: 223 VKW-TKTELENIDRKTRKRMTIYGMLHPRANVGCLYLPRRCGGRGLIGVEDCKHLEEKGL 281

Query: 111 VDHKPPKTKAGLLSLR 126
            D+     +  LL++R
Sbjct: 282 ADYVHKSEEPLLLAVR 297


>SB_30824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 2/83 (2%)

Query: 130 EAMKVTAIYDKYDVNEYLMGAGLSVTP-EYRGLGIAVELLRARINLARELRFRVTGGIFT 188
           EA   +  +DK    E L G+   V   E  GL  A E+ +    + +EL   V G + T
Sbjct: 23  EAFNASISFDKRMWKEDLKGSEAYVKAIEKVGLVTAAEMKQILDGIQKELVGSVAGKLHT 82

Query: 189 GQRAQNSAEKADMECVYKISYKD 211
           G R++N   + D   V  I Y D
Sbjct: 83  G-RSRNDQAQVDARLVRVILYFD 104


>SB_34320| Best HMM Match : Ponericin (HMM E-Value=1.2)
          Length = 303

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 51  VWWSTAGTAQNMDAVQEYRVLLTSIIKQKASVACFLAEGDGSGRTLVGVNMCLPQEKGRF 110
           V W T    +N+D     R+ +  ++  +A+V          GR L+GV  C+  E+   
Sbjct: 52  VKW-TKTELENIDRKTRKRMTIYGMLHPRANVGRLYLPRRCGGRGLIGVEDCIHLEEKGL 110

Query: 111 VDHKPPKTKAGLLSLR 126
            D+     +  LL++R
Sbjct: 111 ADYVHKSEEPLLLAVR 126


>SB_8366| Best HMM Match : Ponericin (HMM E-Value=2.9)
          Length = 307

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 51  VWWSTAGTAQNMDAVQEYRVLLTSIIKQKASVACFLAEGDGSGRTLVGVNMCLPQEKGRF 110
           V W T    +N+D     R+ +  ++  +A+V          GR L+GV  C+  E+   
Sbjct: 18  VKW-TKTELENIDRKTRKRMTIYGMLHPRANVGRLCLPRRCGGRGLIGVEDCIHLEEKGL 76

Query: 111 VDHKPPKTKAGLLSLR 126
            D+     +  LL++R
Sbjct: 77  ADYVHKSEEPLLLAVR 92


>SB_32862| Best HMM Match : CaM_binding (HMM E-Value=1.4)
          Length = 202

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 51  VWWSTAGTAQNMDAVQEYRVLLTSIIKQKASVACFLAEGDGSGRTLVGVNMCLPQEKGRF 110
           V W T    +N+D     R+ +  ++  +A+V          GR L+GV  C+  E+   
Sbjct: 18  VKW-TKTELENIDRKTRKRMTIYGMLHPRANVGRLYLPRRCGGRGLIGVEDCIHLEEKGL 76

Query: 111 VDHKPPKTKAGLLSLR 126
            D+     +  LL++R
Sbjct: 77  ADYVHKSEEPLLLAVR 92


>SB_20028| Best HMM Match : Ponericin (HMM E-Value=2.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 51  VWWSTAGTAQNMDAVQEYRVLLTSIIKQKASVACFLAEGDGSGRTLVGVNMCLPQEKGRF 110
           V W T    +N+D     R+ +  ++  +A+V          GR L+GV  C+  E+   
Sbjct: 18  VKW-TKTELENIDRKTRKRMTIYGMLHPRANVGRLCLPRRCGGRGLIGVEDCIHLEEKGL 76

Query: 111 VDHKPPKTKAGLLSLR 126
            D+     +  LL++R
Sbjct: 77  ADYVHKSEEPLLLAVR 92


>SB_2167| Best HMM Match : Ponericin (HMM E-Value=3.2)
          Length = 298

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 51  VWWSTAGTAQNMDAVQEYRVLLTSIIKQKASVACFLAEGDGSGRTLVGVNMCLPQEKGRF 110
           V W T    +N+D     R+ +  ++  +A+V          GR L+GV  C+  E+   
Sbjct: 19  VKW-TKTELENIDRKTRKRMTIYGMLHPRANVGHLYLPRRCGGRGLIGVEDCIHLEEKGL 77

Query: 111 VDHKPPKTKAGLLSLR 126
            D+     +  LL++R
Sbjct: 78  ADYVHKSEEPLLLAVR 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,272,465
Number of Sequences: 59808
Number of extensions: 274122
Number of successful extensions: 597
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 7
length of query: 234
length of database: 16,821,457
effective HSP length: 80
effective length of query: 154
effective length of database: 12,036,817
effective search space: 1853669818
effective search space used: 1853669818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)