GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000296-TA|BGIBMGA000296-PA|undefined
         (234 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF014940-2|AAB63934.1|  232|Caenorhabditis elegans Hypothetical ...    28   6.6  

>Z73971-4|CAA98254.1|  205|Caenorhabditis elegans Hypothetical
           protein C50H2.6 protein.
          Length = 205

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 6/42 (14%)

Query: 168 LRARINLARELRFRVTG------GIFTGQRAQNSAEKADMEC 203
           L A+I L++E+RF++T       G+F+    Q  AEK +M C
Sbjct: 122 LHAKILLSKEVRFQLTMKFERNCGVFSKAEIQTLAEKYNMTC 163


>AF014940-2|AAB63934.1|  232|Caenorhabditis elegans Hypothetical
           protein W02D7.4 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 153 SVTPEYRGLGIAVELLRARINLARELRFRVTGGIF---TGQRAQNSAEKADMECVYKISY 209
           SV P++  LGIA +++   +   R L+    GG+    T    Q   EKA  +C+ ++ Y
Sbjct: 138 SVAPQFTRLGIATKMVTTNMT-KRNLKKYNIGGVLSETTSLANQIVLEKAGFKCLKELPY 196


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,430,989
Number of Sequences: 27539
Number of extensions: 202913
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 2
length of query: 234
length of database: 12,573,161
effective HSP length: 79
effective length of query: 155
effective length of database: 10,397,580
effective search space: 1611624900
effective search space used: 1611624900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)