GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000296-TA|BGIBMGA000296-PA|undefined
         (234 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila...    29   2.7  
At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    29   3.6  
At5g21010.1 68418.m02497 speckle-type POZ protein-related contai...    29   3.6  
At4g38110.1 68417.m05382 expressed protein                             29   3.6  

>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
           to RNA helicase GB:A57514 GI:897915 from [Rattus
           norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 989

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 84  CFLAEGDGSGRTLVGVNMCLPQEKGRFVDHKPPKTKAGLLSLRMLAEAMKVTAIYDKYDV 143
           C      GSG+TL      LP  +    D  P +   G + L M      V  IY   D+
Sbjct: 436 CIGVAKTGSGKTL---GFVLPMLR-HIKDQPPVEAGDGPIGLVMAPTRELVQQIYS--DI 489

Query: 144 NEYLMGAGLSVTPEYRGLGIAVEL 167
            ++    G+   P Y G G+A ++
Sbjct: 490 RKFSKALGIICVPVYGGSGVAQQI 513


>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 155 TPEYRGLGIAVELLRARINLARELRFRVTGGIFTGQRAQNSAEKADMEC 203
           +PE R  G+   ++RA      + R+    G+FTG+  +   EK   EC
Sbjct: 91  SPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGE-GEEEEEKRSQEC 138


>At5g21010.1 68418.m02497 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
           MATH domain; similar to Speckle-type POZ protein
           (SP:O43791) [Homo sapiens]
          Length = 410

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 11  SRFERTIQGDRTLQFEIEDIPESMWSTAVEFMLGNYIREDVWWSTAGTAQNMDAVQEYRV 70
           S+F    + + T +  I D+   ++   ++FM  + + EDV  +TA T + +   + Y  
Sbjct: 225 SKFFSEFEANNT-EVTINDLEPKVFKALLQFMYKDSLPEDVEPATAHTFERLKLSEIYET 283

Query: 71  LLTSII 76
           L+  ++
Sbjct: 284 LIVKVL 289


>At4g38110.1 68417.m05382 expressed protein 
          Length = 475

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 159 RGLGIAVELLRARINLARELRFRVTGGIFTGQRAQNSAEKADMECVYKIS 208
           R +G+ +    A  NL   LR+RV    F G +  +    A +EC  +++
Sbjct: 177 RAIGVRITASWALANLCDALRYRVDDRSFEGLKTTSQVVDALIECALRLT 226


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,312,950
Number of Sequences: 28952
Number of extensions: 205832
Number of successful extensions: 363
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 362
Number of HSP's gapped (non-prelim): 4
length of query: 234
length of database: 12,070,560
effective HSP length: 79
effective length of query: 155
effective length of database: 9,783,352
effective search space: 1516419560
effective search space used: 1516419560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)