Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000294-TA|BGIBMGA000294-PA|undefined
(232 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 31 0.14
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo... 29 0.76
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 2.3
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 27 2.3
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 4.1
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ... 26 4.1
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 26 4.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 5.4
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.4
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 26 5.4
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo... 25 7.1
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|... 25 7.1
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 25 7.1
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M... 25 7.1
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 25 7.1
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 9.4
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 31.1 bits (67), Expect = 0.14
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 97 IIFSPWDTISGYEDPVTDNVIDIPGNIAVLS 127
IIF W+ + + DNV DIP NI VLS
Sbjct: 841 IIFCSWNCMRKTKQGTYDNVFDIPYNIPVLS 871
>SPAC30.02c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 281
Score = 28.7 bits (61), Expect = 0.76
Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 116 VIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQLVIRV 175
++D + +++++P + +A + T S+P ++++ +F + N+ SY+ V++
Sbjct: 213 ILDNSNDTSLITVPGSKLQIALPSVTVSLPLLQRLRRQF-----IQINRQQSYNTNVLKE 267
Query: 176 QSVHFHKGR 184
V F G+
Sbjct: 268 MFVEFLNGQ 276
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 112 VTDNVIDIPGNIAVLS--IPEAVADVAKETTTSSMPRIEQIAN 152
+TDN+ + + A S +PE + DV + T++MP + +A+
Sbjct: 278 ITDNLCKLVPDPAEASDFLPELIPDVERIAQTAAMPEVRALAS 320
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 125 VLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQ 170
+++I + + KET T+S+ R E++ +K EE+ S+++ +
Sbjct: 352 IMTIQIELESLRKETDTTSVERREKLESKLTDLKEEQDKLSAAWEE 397
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/65 (24%), Positives = 26/65 (40%)
Query: 78 TTYPRKPVITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAVADVAK 137
T Y P ++ T+ S T++G PV N ++IP + IP +
Sbjct: 739 TVYIETPSVSATTTTTTIGYSGSLTTTLTGSSGPVVTNTVEIPYGNSSYIIPTTIVTGTV 798
Query: 138 ETTTS 142
T T+
Sbjct: 799 TTVTT 803
>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 21 EPQLPESGPKVRAQKSWYSVGDMLRANCTSPPADPAANLTWLLNGQEVKGLDIPLVD 77
E +LP+ GP+V A ++ SV + R SP +DP + ++ E+ + V+
Sbjct: 164 EKRLPD-GPRVLALRAISSVDEENRKERLSPDSDPVETESVYVDNGELSNQKVETVE 219
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 92 EDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEA 131
+ ++ + FS SG DP N++ + AVLSIPEA
Sbjct: 270 KSSSSVEFSDHSQDSG--DPSQQNILQVKNVQAVLSIPEA 307
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 103 DTISGYEDPVTDNVIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKS 162
+ ISG + + + D P N + E +A +++TT+ + NK +SD+E
Sbjct: 19 EDISGQNEYLDNTSQDSPQNDELAEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQ 78
Query: 163 NKSS 166
S
Sbjct: 79 ELES 82
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 5.4
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 62 LLNGQEVKGL------DIPLVDTTYPRKPVITDTSLEDANRIIFSPWDTISGYEDPVTDN 115
++NG+E++ L D + +Y R P + D S E ++ W G P T
Sbjct: 106 VMNGRELRVLLPKEARDQGITLPSYMRHPRLFDLSSE------YAKWQIRMGAVPPYTIT 159
Query: 116 VIDIPGNIAVLSIPEAVADVAKETTTSSMPRI 147
+ I G + V S+P A E + S P I
Sbjct: 160 LSHIFGKLDVDSLPPITESKAIELSPSDAPYI 191
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Query: 122 NIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQLVI 173
N ++ SI DV KE++ +P + N FN+ ++ S+ ++ ++
Sbjct: 923 NPSINSINRQTHDVEKESSDRDVPHLLDPDNNFNLKGNPENPSSTFFTPEIL 974
>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 95 NRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAV 132
N IF+ TI+GY T+ V G++ + ++ +AV
Sbjct: 40 NVTIFAMGGTIAGYASSSTETVDYAAGSVGIATLVDAV 77
>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 77 DTTYP---RKPVIT-DTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAV 132
DT Y ++ ++T + ++ D+ +++F PWD Y+D TD V + + +P A
Sbjct: 22 DTLYSCIRKESIVTLNEAVPDSGKLVFKPWDL--RYDD--TDIVESDADDQLLFQVPFAG 77
Query: 133 ADVAKETTTSSMPRIEQIANKFNI 156
A K P E + F++
Sbjct: 78 AATLKSILVRIFPN-ETAPHSFSL 100
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 7.1
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 10 YNEQLNTDAICEPQLPESGPKVRAQKSWYSVGDMLRANCTSPPADPAANLTWLLN 64
YNE + D + E G K G N TS P D +TWLL+
Sbjct: 611 YNETI-IDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSEPLDTPEQVTWLLD 664
>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 360
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 95 NRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAV 132
N IF+ TI+GY T+ V G++ + ++ +AV
Sbjct: 40 NVTIFAMGGTIAGYASSSTETVDYAAGSVGIATLVDAV 77
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 5 ENKSEYNEQLNTDAICEPQLPESGPK 30
+ SE+++Q ++ +C+P +PE K
Sbjct: 142 QRSSEFSKQFFSERLCKPNVPEPETK 167
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 84 PVITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNI 123
P+ ++TS D+N + S D G E +T+ D+P N+
Sbjct: 24 PLSSETSSVDSNGLKNSLKDAYFGLEKALTNTDADLPLNL 63
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.130 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,659
Number of Sequences: 5004
Number of extensions: 46204
Number of successful extensions: 115
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 16
length of query: 232
length of database: 2,362,478
effective HSP length: 71
effective length of query: 161
effective length of database: 2,007,194
effective search space: 323158234
effective search space used: 323158234
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -