Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000294-TA|BGIBMGA000294-PA|undefined
         (232 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2)                29   2.5  
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)               29   3.3  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_34550| Best HMM Match : VWA (HMM E-Value=0)                         28   7.5  
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_48456| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   10.0 

>SB_49700| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 7645

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 11/99 (11%)

Query: 77   DTTYP-RKPVITDTSLEDAN--RIIFSPWD-TISGYEDPVTDNVID----IPGNIAVLSI 128
            DT  P R P+I D SLED+    ++ S  D T++   D  T N+ D    I  N+  L +
Sbjct: 5590 DTEVPVRVPIINDASLEDSESFTVVLSSDDPTVTISTDTATVNINDDDAVIGFNLESLEV 5649

Query: 129  PEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSS 167
            PE +     E   +       + +KFN+   + S KS S
Sbjct: 5650 PEDIGTANVEVVRNG---FTDVPHKFNVVVTDGSAKSDS 5685


>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 583

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 5/90 (5%)

Query: 92  EDANRIIFSPWDTISGYEDPVTDNVID-----IPGNIAVLSIPEAVADVAKETTTSSMPR 146
           E AN +    WD    Y+D + +N ID     I  N  +++  +  +D  K      +  
Sbjct: 289 EQANEVSVPFWDDNEYYDDTIDNNYIDVVADEIERNDLIMTRMDQSSDFYKAKLYLLLDA 348

Query: 147 IEQIANKFNISDEEKSNKSSSYSQLVIRVQ 176
           ++QI + F  + E       +Y   +  ++
Sbjct: 349 MKQIQSNFKKAQENAQGSLGTYDAFICELK 378


>SB_39036| Best HMM Match : HSP9_HSP12 (HMM E-Value=6.2)
          Length = 513

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/52 (32%), Positives = 23/52 (44%)

Query: 49  TSPPADPAANLTWLLNGQEVKGLDIPLVDTTYPRKPVITDTSLEDANRIIFS 100
           T  P+DP        N   +K    P +++     P  TDT+  D NRI FS
Sbjct: 176 TDQPSDPCQRTAAEKNPIPLKETPTPALESAPAAMPDTTDTAWSDWNRIRFS 227


>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 103 DTISGYEDPVTDNVIDIPGNIAVLSIPEAVA-DVAKETTTSSMPRIEQIANKFNISDEEK 161
           D  S  E+P+ D+     GN      PE  + DV+++      P ++ I    ++S+EE+
Sbjct: 381 DMFSNTEEPLLDD-----GNSPRGRTPEGSSQDVSEDEHLEGRPLLDAIKKVPDVSEEEE 435

Query: 162 SNKSSSYSQLVIR 174
            +   S+  L+IR
Sbjct: 436 DDLHGSHENLLIR 448


>SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)
          Length = 263

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/75 (24%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 71  LDIPLVDTTYPRKPVITDTSLEDANRIIFSPWDTISGYEDP--VTD--NVIDIPGNIAVL 126
           +D  L+ + + R  V++ TS+    +  F    ++SG +DP  +TD   ++++P +I  +
Sbjct: 5   VDAILLSSPFTRSCVVSGTSVVACAKYAFHALSSLSGVDDPGLLTDPMGLVELPDDITTV 64

Query: 127 SIPEAVADVAKETTT 141
                +A +  ET +
Sbjct: 65  VPSLTLALIFSETVS 79


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 42   DMLRA-NCTSPPADPAANLTWLLNGQEVKGLDIPLVDTTYPRKPVITDTSLEDANRIIFS 100
            D L+A NC +   DP  ++ +LL+G    G D  L    + +K +   T  E+   +   
Sbjct: 4794 DGLKADNCETDFTDPTLDVLFLLDGASEVGADTFLKFINFTKKFIEPFTISENKTNVAAG 4853

Query: 101  PWDTISGYEDPVTDNVIDIPGNIAVL 126
             +  +   E   T+N  D P  +A L
Sbjct: 4854 VFADVGKIEFLFTEN-YDKPSVLAAL 4878


>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 9   EYNEQLNTDAICEPQLPESGPKVRAQKSWYSVGDMLRANCTSPPADPAANLTWLLNGQEV 68
           E N  ++ D    P+  +     RA  +W +   M R  C +    P     WL +G+E+
Sbjct: 327 EINASIHLDVKEPPRFLDWNKMKRAFIAWPASHSM-RLRCQAT-GTPPLRYHWLKDGKEI 384

Query: 69  KGLDI-PLVDTT 79
           KG  + P ++TT
Sbjct: 385 KGRRLDPYMNTT 396


>SB_34550| Best HMM Match : VWA (HMM E-Value=0)
          Length = 519

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 42  DMLRA-NCTSPPADPAANLTWLLNGQEVKGLDIPLVDTTYPRKPVITDTSLEDANRIIFS 100
           D L+A NC +   DP  ++ +LL+G    G D  L    + +K +   T  E+   +   
Sbjct: 67  DGLKADNCETDFTDPTLDVLFLLDGASEVGADTFLKFINFTKKFIEPFTISENKTNVAAG 126

Query: 101 PWDTISGYEDPVTDNVIDIPGNIAVL 126
            +  +   E   T+N  D P  +A L
Sbjct: 127 VFADVGKIEFLFTEN-YDKPSVLAAL 151


>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 117 IDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQL 171
           I + G+  V   PE VAD      + S+P ++ +  K N   +EK N  S +S+L
Sbjct: 325 IRLCGDFKVTLNPELVAD------SYSLPTLDDLQEKMNDDLQEKMNGGSFFSKL 373


>SB_48456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)

Query: 159 EEKSNKSSSYSQLVIRVQSVHFHKGRLNVTCVAHVLSIW 197
           E+ S   S +S  V+  Q+ + HK + N  CV H+ S++
Sbjct: 16  EQFSLTLSDFSSHVLHKQTCNCHKPQNNKPCVVHMTSLF 54


>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 21/96 (21%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 87  TDTSLEDANRIIFSPWDTISGYEDPVTDNVIDI--PGNIAVLSIPEAVADVAKETTTSSM 144
           T  S+   N    SPW    G +DP+   + DI       +     A A  A     S +
Sbjct: 569 TKISIAPTNTFFLSPWSAAVGMKDPLL-KISDIHRSSKTGIAFTVSAQAPAAFVWLASGI 627

Query: 145 PRIEQIANKFNISDE-EKSNKSSSYSQLVIRVQSVH 179
            R     N F+ +++ +K  + S + ++ +R++ ++
Sbjct: 628 MRGRFSDNGFHQTEKVKKRRRLSEFGRIRLRIKGIN 663


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,005,475
Number of Sequences: 59808
Number of extensions: 316958
Number of successful extensions: 659
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 656
Number of HSP's gapped (non-prelim): 14
length of query: 232
length of database: 16,821,457
effective HSP length: 80
effective length of query: 152
effective length of database: 12,036,817
effective search space: 1829596184
effective search space used: 1829596184
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)