Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000294-TA|BGIBMGA000294-PA|undefined
         (232 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19300.1 68414.m02400 glycosyl transferase family 8 protein c...    31   0.66 
At5g26030.1 68418.m03097 ferrochelatase I identical to Swiss-Pro...    30   1.5  
At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing ...    29   2.0  
At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family...    29   2.7  
At5g25520.2 68418.m03037 transcription elongation factor-related...    28   6.2  
At5g25520.1 68418.m03036 transcription elongation factor-related...    28   6.2  
At3g54760.1 68416.m06059 dentin sialophosphoprotein-related cont...    28   6.2  
At1g11730.1 68414.m01346 galactosyltransferase family protein co...    28   6.2  
At5g66960.1 68418.m08442 prolyl oligopeptidase family protein si...    27   8.1  
At3g61690.1 68416.m06913 expressed protein                             27   8.1  
At3g42690.1 68416.m04439 Ulp1 protease family protein contains P...    27   8.1  

>At1g19300.1 68414.m02400 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 Glycosyl transferase
           family 8
          Length = 351

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 120 PGNIAVLSIPEAVADVA--KETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQLVIRVQS 177
           P NI    +  A AD +  + T +SS P ++     FN+S   +   SS  S L   +  
Sbjct: 93  PENIVFHFVASASADASSLRATISSSFPYLDFTVYVFNVSSVSRLISSSIRSALDCPLNY 152

Query: 178 VHFHKGRLNVTCVAHVLSIWSSSGVLLLDEERPQIAPVMGSRDS 221
              +   L   CV  V  ++  S ++L+D+     A  +G RDS
Sbjct: 153 ARSYLADLLPPCVRRV--VYLDSDLILVDDIAKLAATDLG-RDS 193


>At5g26030.1 68418.m03097 ferrochelatase I identical to
           Swiss-Prot:P42043 ferrochelatase I,
           chloroplast/mitochondrial precursor (EC 4.99.1.1)
           (Protoheme ferro-lyase) (Heme synthetase) [Arabidopsis
           thaliana]
          Length = 466

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 108 YEDPVTDNVIDIPGNIAVLSI-PEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSS 166
           Y +   ++ ++  G +  L + P  + D+A +    S+P  E ++N   + D E S  S 
Sbjct: 377 YRELALESGVENWGRVPALGLTPSFITDLA-DAVIESLPSAEAMSNPNAVVDSEDSESSD 435

Query: 167 SYSQLV 172
           ++S +V
Sbjct: 436 AFSYIV 441


>At5g19030.3 68418.m02263 RNA recognition motif (RRM)-containing
           protein low similarity to Cold-inducible RNA-binding
           protein (Glycine-rich RNA-binding protein CIRP) from
           {Homo sapiens} SP|Q14011, {Rattus norvegicus}
           SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 130

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 4/119 (3%)

Query: 75  LVDTTYPRKPVITDTSLEDANRIIFSPWDTISGYE-DPVTDNVIDIPGNIAVLSIPEAVA 133
           L  +T PR  +I+  S   A   + SP  TIS    D  T     +P +I+ L +     
Sbjct: 10  LTMSTIPRDRLIS--SFHTARSKLCSPLRTISCVAGDDETREASSLPSSISSLFVKGFSD 67

Query: 134 DVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQLVIRVQSVHFHKGRLNVTCVAH 192
            V++           Q+ N+   S  +   K    +   IR+  V   +GR  V C +H
Sbjct: 68  SVSEGRLKKVFSEFGQVTNEHYFSGSKNHRKRKDSAVTRIRICLVQQQRGR-TVGCRSH 125


>At4g01050.1 68417.m00142 hydroxyproline-rich glycoprotein family
           protein
          Length = 466

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 75  LVDTTYPRKPVITDTSLEDA--NRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAV 132
           L   T P K +  + +L+ +      F     I G  + VTDN + I G +A L++P  +
Sbjct: 60  LSSATAPAKSLTYEEALQQSMTTSSSFDSDGLIEGISNFVTDNPLVIAGGVAALAVPFVL 119

Query: 133 ADVAKETTTS 142
           + V  +   S
Sbjct: 120 SQVLNKKPKS 129


>At5g25520.2 68418.m03037 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 997

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 85  VITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAVADVAKETTTSSM 144
           V+ DT ++  N +  +         DPV    +D+   I   S P A A  +K +T +++
Sbjct: 444 VLRDTDIDVRNLVRKTHKGEFQVEIDPVDSGTVDVSAEITSNSKPRAKAKSSKSSTKATL 503

Query: 145 PRIEQIANKFNISDEEKSNKSSS 167
            + +  +N  NI    KSN+ +S
Sbjct: 504 KKND--SNDKNI----KSNQGTS 520


>At5g25520.1 68418.m03036 transcription elongation factor-related
           contains weak similarity to transcription elongation
           factors
          Length = 735

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 85  VITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAVADVAKETTTSSM 144
           V+ DT ++  N +  +         DPV    +D+   I   S P A A  +K +T +++
Sbjct: 444 VLRDTDIDVRNLVRKTHKGEFQVEIDPVDSGTVDVSAEITSNSKPRAKAKSSKSSTKATL 503

Query: 145 PRIEQIANKFNISDEEKSNKSSS 167
            + +  +N  NI    KSN+ +S
Sbjct: 504 KKND--SNDKNI----KSNQGTS 520


>At3g54760.1 68416.m06059 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor (Dentin phosphophoryn DPP,
           Dentin sialoprotein DSP) [Homo sapiens]
          Length = 792

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 109 EDPVTDNVIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSY 168
           +D  T+N    P +   LS+ E  AD  KETT      I ++       DEE   + + +
Sbjct: 141 QDVETENFQLNPVHGETLSVAEDKADQEKETTKKIEKDINEMEVDSKQEDEENETEDAKH 200

Query: 169 SQ 170
           S+
Sbjct: 201 SE 202


>At1g11730.1 68414.m01346 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 384

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 2/50 (4%)

Query: 115 NVIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNK 164
           NV+D  GN  +  + ++++++  +   +   R E ++ KFNIS+E K  K
Sbjct: 67  NVLDY-GNNTIGILDKSISNLEMKLVAARAER-ESLSGKFNISNEAKKRK 114


>At5g66960.1 68418.m08442 prolyl oligopeptidase family protein
           similar to OpdB [Treponema denticola] GI:13786054;
           contains Pfam profiles PF00326: prolyl oligopeptidase
           family, PF02897: Prolyl oligopeptidase, N-terminal
           beta-propeller domain
          Length = 792

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 46  ANCTSPPADPAANLTWLLNGQ 66
           A C+ P AD  +N+ W  NGQ
Sbjct: 221 ALCSKPHADRVSNIAWAKNGQ 241


>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 115 NVIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQI-ANKFNISDEEKSNKSSSYSQL-- 171
           N I + G     S+P    +   E T+    + ++   N +  + E  SN+S+   +L  
Sbjct: 417 NAIRLGGVHGARSMPSQQNNCGTEITSRVTYQTQKSRGNSYQPAQEVNSNQSALNDKLQQ 476

Query: 172 VIRVQSV--HFHKGRLNVTCVAHVLSIWSSSGVLLLDEERPQIAPVMGSRDSNSGNVMGL 229
            ++ +++  +FH GR           +  + G  LL   R + AP  G R +NS  V  +
Sbjct: 477 TVKPETLVNNFH-GRHIFARTRSSPELTETHGEALLQSRRSRAAPDAGKRQTNSTRVDSI 535

Query: 230 K 230
           +
Sbjct: 536 R 536


>At3g42690.1 68416.m04439 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345, At4g04130
          Length = 1009

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 62  LLNGQEVKGLDIPLVDTTYPRKPVITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPG 121
           +L G+ V  +DIP      P   + TDT+ E     I    D   G E+   +    IP 
Sbjct: 595 ILAGEGVTAMDIPEKIAEIPASSIPTDTAKEAEKDAI---EDDTFGEENQTQNPASPIP- 650

Query: 122 NIAVLSIPEAVADVAKETTTSSMPR 146
           N+      EA  ++ +ET     P+
Sbjct: 651 NLPKTKEGEAEEEMVEETIIEGSPK 675


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.312    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,786,648
Number of Sequences: 28952
Number of extensions: 235435
Number of successful extensions: 521
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 515
Number of HSP's gapped (non-prelim): 11
length of query: 232
length of database: 12,070,560
effective HSP length: 79
effective length of query: 153
effective length of database: 9,783,352
effective search space: 1496852856
effective search space used: 1496852856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)