GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000294-TA|BGIBMGA000294-PA|undefined
         (232 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.22 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    24   0.87 
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   6.2  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    21   8.1  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    21   8.1  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    21   8.1  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    21   8.1  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 41  GDMLRANCTSPPADPAANLTWLLNG 65
           GD +   CT    D   N++W LNG
Sbjct: 618 GDGVSVQCTVSKGDYPLNISWTLNG 642


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 24.2 bits (50), Expect = 0.87
 Identities = 7/31 (22%), Positives = 20/31 (64%)

Query: 102 WDTISGYEDPVTDNVIDIPGNIAVLSIPEAV 132
           W++++G   P+  + ID+ G+  +L++  ++
Sbjct: 217 WESVTGQNAPLYASSIDVEGSQKLLNVDASI 247


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 105 ISGYEDPVTDNVIDI 119
           + GY+ P   NV+DI
Sbjct: 182 VGGYDIPAMSNVLDI 196


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 77  DTTYPRKPVITDTSLEDANRIIFSPWDTI 105
           D TY R    +D ++E + R   S WD++
Sbjct: 502 DLTYLRIGAPSDVTVETSIRSTASFWDSL 530


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 77  DTTYPRKPVITDTSLEDANRIIFSPWDTI 105
           D TY R    +D ++E + R   S WD++
Sbjct: 502 DLTYLRIGAPSDVTVETSIRSTASFWDSL 530


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 77  DTTYPRKPVITDTSLEDANRIIFSPWDTI 105
           D TY R    +D ++E + R   S WD++
Sbjct: 502 DLTYLRIGAPSDVTVETSIRSTASFWDSL 530


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 77  DTTYPRKPVITDTSLEDANRIIFSPWDTI 105
           D TY R    +D ++E + R   S WD++
Sbjct: 502 DLTYLRIGAPSDVTVETSIRSTASFWDSL 530


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,110
Number of Sequences: 317
Number of extensions: 2158
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 232
length of database: 114,650
effective HSP length: 55
effective length of query: 177
effective length of database: 97,215
effective search space: 17207055
effective search space used: 17207055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)