GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000294-TA|BGIBMGA000294-PA|undefined
         (232 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    31   0.14 
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    29   0.76 
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    27   2.3  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    27   2.3  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    26   4.1  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   4.1  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    26   4.1  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    26   5.4  
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   5.4  
SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase |Schizo...    25   7.1  
SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|...    25   7.1  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   7.1  
SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr 1|||M...    25   7.1  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    25   7.1  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.4  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/31 (48%), Positives = 18/31 (58%)

Query: 97  IIFSPWDTISGYEDPVTDNVIDIPGNIAVLS 127
           IIF  W+ +   +    DNV DIP NI VLS
Sbjct: 841 IIFCSWNCMRKTKQGTYDNVFDIPYNIPVLS 871


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 14/69 (20%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 116 VIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQLVIRV 175
           ++D   + +++++P +   +A  + T S+P ++++  +F      + N+  SY+  V++ 
Sbjct: 213 ILDNSNDTSLITVPGSKLQIALPSVTVSLPLLQRLRRQF-----IQINRQQSYNTNVLKE 267

Query: 176 QSVHFHKGR 184
             V F  G+
Sbjct: 268 MFVEFLNGQ 276


>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 112 VTDNVIDIPGNIAVLS--IPEAVADVAKETTTSSMPRIEQIAN 152
           +TDN+  +  + A  S  +PE + DV +   T++MP +  +A+
Sbjct: 278 ITDNLCKLVPDPAEASDFLPELIPDVERIAQTAAMPEVRALAS 320


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/46 (26%), Positives = 27/46 (58%)

Query: 125 VLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQ 170
           +++I   +  + KET T+S+ R E++ +K     EE+   S+++ +
Sbjct: 352 IMTIQIELESLRKETDTTSVERREKLESKLTDLKEEQDKLSAAWEE 397


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/65 (24%), Positives = 26/65 (40%)

Query: 78  TTYPRKPVITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAVADVAK 137
           T Y   P ++ T+         S   T++G   PV  N ++IP   +   IP  +     
Sbjct: 739 TVYIETPSVSATTTTTTIGYSGSLTTTLTGSSGPVVTNTVEIPYGNSSYIIPTTIVTGTV 798

Query: 138 ETTTS 142
            T T+
Sbjct: 799 TTVTT 803


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 21  EPQLPESGPKVRAQKSWYSVGDMLRANCTSPPADPAANLTWLLNGQEVKGLDIPLVD 77
           E +LP+ GP+V A ++  SV +  R    SP +DP    +  ++  E+    +  V+
Sbjct: 164 EKRLPD-GPRVLALRAISSVDEENRKERLSPDSDPVETESVYVDNGELSNQKVETVE 219


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 92  EDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEA 131
           + ++ + FS     SG  DP   N++ +    AVLSIPEA
Sbjct: 270 KSSSSVEFSDHSQDSG--DPSQQNILQVKNVQAVLSIPEA 307


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 103 DTISGYEDPVTDNVIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKS 162
           + ISG  + + +   D P N  +    E +A  +++TT+      +   NK  +SD+E  
Sbjct: 19  EDISGQNEYLDNTSQDSPQNDELAEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQ 78

Query: 163 NKSS 166
              S
Sbjct: 79  ELES 82


>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 12/92 (13%)

Query: 62  LLNGQEVKGL------DIPLVDTTYPRKPVITDTSLEDANRIIFSPWDTISGYEDPVTDN 115
           ++NG+E++ L      D  +   +Y R P + D S E      ++ W    G   P T  
Sbjct: 106 VMNGRELRVLLPKEARDQGITLPSYMRHPRLFDLSSE------YAKWQIRMGAVPPYTIT 159

Query: 116 VIDIPGNIAVLSIPEAVADVAKETTTSSMPRI 147
           +  I G + V S+P      A E + S  P I
Sbjct: 160 LSHIFGKLDVDSLPPITESKAIELSPSDAPYI 191


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/52 (23%), Positives = 26/52 (50%)

Query: 122 NIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQLVI 173
           N ++ SI     DV KE++   +P +    N FN+    ++  S+ ++  ++
Sbjct: 923 NPSINSINRQTHDVEKESSDRDVPHLLDPDNNFNLKGNPENPSSTFFTPEIL 974


>SPBPB21E7.09 ||SPAPB21E7.09, SPAPB21E7.09|L-asparaginase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 95  NRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAV 132
           N  IF+   TI+GY    T+ V    G++ + ++ +AV
Sbjct: 40  NVTIFAMGGTIAGYASSSTETVDYAAGSVGIATLVDAV 77


>SPBP35G2.02 |||DUF1000 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 77  DTTYP---RKPVIT-DTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAV 132
           DT Y    ++ ++T + ++ D+ +++F PWD    Y+D  TD V     +  +  +P A 
Sbjct: 22  DTLYSCIRKESIVTLNEAVPDSGKLVFKPWDL--RYDD--TDIVESDADDQLLFQVPFAG 77

Query: 133 ADVAKETTTSSMPRIEQIANKFNI 156
           A   K       P  E   + F++
Sbjct: 78  AATLKSILVRIFPN-ETAPHSFSL 100


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 10  YNEQLNTDAICEPQLPESGPKVRAQKSWYSVGDMLRANCTSPPADPAANLTWLLN 64
           YNE +  D +      E G K          G     N TS P D    +TWLL+
Sbjct: 611 YNETI-IDLLASGNEEEKGKKKLEIYHDTKAGRTTITNITSEPLDTPEQVTWLLD 664


>SPAC186.03 |||L-asparaginase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 360

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 95  NRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAV 132
           N  IF+   TI+GY    T+ V    G++ + ++ +AV
Sbjct: 40  NVTIFAMGGTIAGYASSSTETVDYAAGSVGIATLVDAV 77


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 8/26 (30%), Positives = 17/26 (65%)

Query: 5   ENKSEYNEQLNTDAICEPQLPESGPK 30
           +  SE+++Q  ++ +C+P +PE   K
Sbjct: 142 QRSSEFSKQFFSERLCKPNVPEPETK 167


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 84  PVITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNI 123
           P+ ++TS  D+N +  S  D   G E  +T+   D+P N+
Sbjct: 24  PLSSETSSVDSNGLKNSLKDAYFGLEKALTNTDADLPLNL 63


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,123,659
Number of Sequences: 5004
Number of extensions: 46204
Number of successful extensions: 115
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 16
length of query: 232
length of database: 2,362,478
effective HSP length: 71
effective length of query: 161
effective length of database: 2,007,194
effective search space: 323158234
effective search space used: 323158234
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)