Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000294-TA|BGIBMGA000294-PA|undefined
(232 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0212 + 28434612-28435931,28436012-28436044,28436557-284366... 31 0.60
06_01_0081 + 646100-646346,646432-646848,647067-647170,648152-64... 29 3.2
12_02_0123 - 13930138-13932471 28 7.4
08_02_0687 + 20053426-20053824,20054194-20054508 28 7.4
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982... 28 7.4
09_06_0245 - 21833622-21833901,21833988-21834059,21834152-218342... 27 9.8
08_02_0774 - 21047696-21048889 27 9.8
01_05_0093 + 18060981-18061295,18062039-18062047 27 9.8
>05_07_0212 +
28434612-28435931,28436012-28436044,28436557-28436670,
28436767-28437102,28437221-28437283,28437364-28437519,
28437650-28437715,28439074-28439310,28439403-28439678,
28440060-28440248,28440459-28440620
Length = 983
Score = 31.5 bits (68), Expect = 0.60
Identities = 30/131 (22%), Positives = 49/131 (37%), Gaps = 2/131 (1%)
Query: 74 PLVDTTYPRKPVITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAVA 133
P V PR+PV DTS E I+ + + DPV + P V P V
Sbjct: 221 PSVVAPPPRRPVKADTSKEKKGPILIDKFASNKPIVDPVVAAALIEPVK-PVRGPPAKVK 279
Query: 134 -DVAKETTTSSMPRIEQIANKFNISDEEKSNKSSSYSQLVIRVQSVHFHKGRLNVTCVAH 192
D K+T+T + PR N + ++ K +S+ R + ++
Sbjct: 280 DDRRKKTSTPAGPRRRMPKNDGLVDEDTAVRKGRRWSKAKRRAARLQLEASQVEEPVRVE 339
Query: 193 VLSIWSSSGVL 203
+L + V+
Sbjct: 340 ILEVGEEGMVI 350
>06_01_0081 +
646100-646346,646432-646848,647067-647170,648152-648352,
649088-649798,649944-650674,650942-651017,651096-651182,
651429-651517,651917-651973,652402-652510,652590-652649,
652835-652919,653178-653242,653694-653753,653869-653913,
654697-654800,654877-655099
Length = 1156
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 72 DIPLVDTTYPRKPVITDTSLEDANRIIFSPW 102
++PL + Y K ++ DT D N + SPW
Sbjct: 688 NVPLSNDRYQTKSLLLDTCSNDRNSVDVSPW 718
>12_02_0123 - 13930138-13932471
Length = 777
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 102 WDTISGYEDPVTDNVIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKF-NISDEE 160
+D +G E+ VTD ID A+ AVA V +E + + ++E++ ++ +I +
Sbjct: 284 FDIAAGKEERVTDESIDAMTPAAISETQVAVATV-REKSKQVLMKVERVVTQYRHIEIFD 342
Query: 161 KSNKSSSYSQLVIRVQSVHFH 181
++K+S R + H++
Sbjct: 343 TASKTSVPITQKTRPEGDHYN 363
>08_02_0687 + 20053426-20053824,20054194-20054508
Length = 237
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 4 EENKSEYNEQLNTDAICEPQLPESGPKVRAQKSWYSVGDMLRANCTSPP 52
E+ K E NE+ ++ AI E P+ R + W G M A +PP
Sbjct: 124 EKEKRENNEKTSSTAIRVESSKEQRPESRGARRWGPKGFMPYAIYLAPP 172
>02_05_0469 +
29297209-29297527,29297847-29297961,29298060-29298255,
29298427-29298540,29298695-29298868,29299326-29299520,
29299666-29299788,29299892-29300004,29300117-29300237,
29300363-29300623,29301712-29301921
Length = 646
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 65 GQEVKGLDIPLVDTTYPRKPVITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIA 124
GQE + + + +T YP + L+ A+ I + ++ SG+++P+ ++ P I
Sbjct: 197 GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPM--YILKSPRTIT 254
Query: 125 VLSIPEAVAD 134
I A+ +
Sbjct: 255 PTDIKVALGE 264
>09_06_0245 -
21833622-21833901,21833988-21834059,21834152-21834231,
21834366-21835109,21835212-21835547
Length = 503
Score = 27.5 bits (58), Expect = 9.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 197 WSSSGVLLLDEERPQIAPVMGSRDSNSGNVM 227
W S G LD RP +APV + N+ +V+
Sbjct: 197 WKSRGKKELDASRPPLAPVDQNNSKNAPSVL 227
>08_02_0774 - 21047696-21048889
Length = 397
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 68 VKGLDIPLVDTTYPRKPVITDTSLEDANRIIFSPWDTISGYEDPVTDNVIDIPGNIAVLS 127
+KG+D+ ++ PRKP +T L + N I + D + I I N +
Sbjct: 141 LKGVDVVVIPAGVPRKPGMTRDDLFNINASIVK--SLVEAVADNCPEAFIHIISNPVNST 198
Query: 128 IPEAVADVAKE 138
+P A A+V K+
Sbjct: 199 VPIA-AEVLKQ 208
>01_05_0093 + 18060981-18061295,18062039-18062047
Length = 107
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/70 (24%), Positives = 31/70 (44%)
Query: 100 SPWDTISGYEDPVTDNVIDIPGNIAVLSIPEAVADVAKETTTSSMPRIEQIANKFNISDE 159
+P + +S + D V++ P +A V T+T++ I + K D
Sbjct: 4 TPSEPLSPRSFALADTVLNAHHPHGASGDPTLIASVVTTTSTTARKAITALLAKHATIDA 63
Query: 160 EKSNKSSSYS 169
S+KSSS++
Sbjct: 64 SSSSKSSSFA 73
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.130 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,971,256
Number of Sequences: 37544
Number of extensions: 281511
Number of successful extensions: 532
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 8
length of query: 232
length of database: 14,793,348
effective HSP length: 80
effective length of query: 152
effective length of database: 11,789,828
effective search space: 1792053856
effective search space used: 1792053856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)
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