GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000294-TA|BGIBMGA000294-PA|undefined
         (232 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.79 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   5.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 39  SVGDMLRANCTSPPADPAANLTWLLNGQEVKG 70
           + G+     C  P  D   N+ W   G+E+ G
Sbjct: 596 NAGEFANLQCIVPTGDLPLNIRWSYPGEEMGG 627


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 39  SVGDMLRANCTSPPADPAANLTWLLNGQ 66
           S G   R  C     DP   ++WL +GQ
Sbjct: 623 SEGMRTRTVCGVAAGDPPLTISWLKDGQ 650


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 151 ANKFNISDEEKSNKSSSYSQLVIRVQSVHFHKGR 184
           AN    S+E +  K+++  +   R +S H  KG+
Sbjct: 754 ANSSTSSEESREEKATTSLEAEKREKSEHCEKGK 787


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 55  PAANLTWLLNGQEVKGLDIPLV 76
           P+ +  W+LN +  K +D+  V
Sbjct: 599 PSLDQVWILNWRNQKDIDVKTV 620


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.130    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,805
Number of Sequences: 429
Number of extensions: 3025
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 232
length of database: 140,377
effective HSP length: 56
effective length of query: 176
effective length of database: 116,353
effective search space: 20478128
effective search space used: 20478128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)