Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000293-TA|BGIBMGA000293-PA|IPR009019|KH, prokaryotic
type
(268 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 29 0.92
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 29 0.92
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 27 2.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 2.1
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 27 2.8
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 27 2.8
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 27 2.8
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 27 3.7
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po... 26 4.9
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 26 6.5
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 26 6.5
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 6.5
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 25 8.6
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 25 8.6
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 25 8.6
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 25 8.6
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 95 TLVRNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSD 142
T++ N ++ S PT+P + +R S + S GDG +D
Sbjct: 45 TVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSSQEYKKSSGTRGDGAND 92
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 28.7 bits (61), Expect = 0.92
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 210 CSVSVECPSERLMRLISGAGGGRLQQIKSSVRNDLIDV 247
C +S P + R ++G GGG L + S + +D++ +
Sbjct: 113 CGISRSLPELCMARALAGIGGGGLGTMSSIISSDIVSL 150
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 155 KFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNEDK---IICS 211
KF + +E+T + P +I +K D L E + ++L Y + + + + ++ S
Sbjct: 1140 KFQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLAS 1199
Query: 212 VSVECPSERL 221
S+ PS ++
Sbjct: 1200 QSIGEPSTQM 1209
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 138 DGVSDIREYLVNNAKPGKF 156
DG+ IREYLVN+ +P F
Sbjct: 592 DGLIKIREYLVNDIEPSTF 610
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 236 IKSSVRNDLIDVFRKTVILDLQLHVKNNFLLAS 268
++ +RNDL ++ RK +D++L NN ++ S
Sbjct: 242 VQRDMRNDLSNLTRKVDRMDMRLSRNNNMIMRS 274
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 207 KIICSVSVECPSERLMRLISGAGGGRLQQIKSSVRNDLIDVFRKT 251
KIIC+ ++ S + +++ GR++QI V DL+ F++T
Sbjct: 866 KIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLV-TFKET 909
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 27.1 bits (57), Expect = 2.8
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 21/107 (19%)
Query: 137 GDGVSDIREYLVNNAKPGKFHYSTEEWTDQTP-------KSVIED----AVRAK-FLDFL 184
G G S EYL GK T E D+ P KS++ D A+R+K + D L
Sbjct: 166 GKGASVAAEYLREKNFKGKITIFTRE--DEVPYDRPKLSKSLLHDISKLALRSKEYYDDL 223
Query: 185 HQEIPYNLKV-KLDYYEEIDNEDKIICSVSVECPSERLMRLISGAGG 230
+N V K+D E+ KI C S E P+E +LI GG
Sbjct: 224 DISFHFNTDVTKIDLAEK-----KIYCG-SDEKPTESYTKLILATGG 264
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 167 TPKSVIEDAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNED 206
TPK+ + + A L +LH++ Y ++ ++ EE+D+E+
Sbjct: 26 TPKAKVIKPIPATVLKYLHEDSIY-VEQPMNTVEEVDSEE 64
>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 82 NKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVS 141
N + ++K++L + ++ L ++ + P P + + E+G S+ + A+ S
Sbjct: 335 NSIISSQNKEELPSSIKYLEKTIMSDQATPHPFSKSLSEKGSSYHKSLTSDFAMKHYIKS 394
Query: 142 DIREYLVNN 150
IR L+N+
Sbjct: 395 TIRSMLLND 403
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 66 VEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVRNLT 101
VEM+++ + I NK D+LR +K++ L+R +T
Sbjct: 103 VEMVDTADQFQN--IGNKEDELRVQKEIQALIRQIT 136
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 5 NDTQIVFLDTPGVVTDREQKKYNLPPSMLGSCHK 38
ND + LDTPG++T K ++ L C K
Sbjct: 196 NDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVK 229
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 25.8 bits (54), Expect = 6.5
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 7 TQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVV 66
T I +D PG+ TD ++ + + +C + + DVV V +A + + D +
Sbjct: 264 TDIALIDAPGLNTD------SMKTTSVFACQEEI---DVVVFVVNAENHFTLSAT--DFL 312
Query: 67 EMLNSVQDMPSFLIINKVDKLRSKKQLLTLV 97
S + F+I+NK D +R K++ L+
Sbjct: 313 RNA-STEKSHIFIIVNKFDNIRDKERCKRLI 342
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 151 AKPGKFHYS-----TEEWTDQTPKSVIEDAVRAKFLDFL 184
AKP H S + W D+TP +E AVR+ +D L
Sbjct: 121 AKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGL 159
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 114 TNPN-KQERGFSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQT 167
TNP Q R F S+LN G D + +A+PGK +T D T
Sbjct: 764 TNPAFPQSRTSWMMPQSFDTSSLNAPGAKDSSSFSSLHAQPGKSGIATMGVADNT 818
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 40 LRCADVVGVVHDASCKYIR-ESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVR 98
L D VG +Y+R E+ HK ++ +LN V +P+ + V L + +
Sbjct: 224 LDARDPVGTRCGTVERYLRNEASHKHMILVLNKVDLVPTSVAAAWVKILAKEYPTIAFHA 283
Query: 99 NLTNGFIAGNSI 110
++ N F G+ I
Sbjct: 284 SINNSFGKGSLI 295
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 139 GVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIP 189
GVS I + N+ KP W + +I D R +D + +P
Sbjct: 529 GVSQIVAIISNDVKPALTSLFQPNWYQSSNMKLIVDTFRDYIVDCIEHMVP 579
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,906
Number of Sequences: 5004
Number of extensions: 55044
Number of successful extensions: 149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 17
length of query: 268
length of database: 2,362,478
effective HSP length: 72
effective length of query: 196
effective length of database: 2,002,190
effective search space: 392429240
effective search space used: 392429240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)
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