Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000293-TA|BGIBMGA000293-PA|IPR009019|KH, prokaryotic
type
         (268 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)             131   7e-31
SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)                 29   5.3  
SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_38676| Best HMM Match : Arm (HMM E-Value=0.59)                      28   9.2  
SB_53088| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)                  28   9.2  
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score =  131 bits (316), Expect = 7e-31
 Identities = 86/254 (33%), Positives = 138/254 (54%), Gaps = 13/254 (5%)

Query: 7   TQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVV 66
           TQI+ LDTPG+VT  E K+  +    + +   +L  AD++GV+ DAS K  R+ +H+ V+
Sbjct: 87  TQIILLDTPGLVTQSEGKRLKMTREHIKAPGDALDDADIIGVICDASNKRTRDRIHQQVL 146

Query: 67  EMLNSVQDMPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQERGFSHF 126
           + L    ++PSFLI+NK+DKLR K  LL L   L+     G    G T    +  G+S F
Sbjct: 147 QALEQHVNIPSFLILNKIDKLRHKVDLLVLAAELSKD--RGRDEWGYT----ETGGWSEF 200

Query: 127 SDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQ 186
            +VFMVSA  G+GV D+REYLV  A P  + Y  +  TD   +S + +  R K L+    
Sbjct: 201 DNVFMVSARLGNGVQDLREYLVLRATPSDWLYPPDCVTDMGLESRVTEVFREKMLELYEH 260

Query: 187 EIPYNLKVKLDYYEEIDNEDKIICSVSVECPSERLMRLISGAGGGRLQQIKSSVRNDLID 246
           EIP+ +K ++    E+   +K+     + C  +   + +      +++ +++ V+ +L +
Sbjct: 261 EIPWQVK-QVPVLCELREGNKLRIHQKLYCRKKSQRKCVL----EKVETLETLVKKELQE 315

Query: 247 VFRKTVILDLQLHV 260
           +F     LDL L V
Sbjct: 316 MF--NCELDLSLDV 327


>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
          Length = 530

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 181 LDFLHQEIPYNLKVKLDYYEEIDNEDKIICSVSVECPSERLMRLIS 226
           LDFL +  P   +  LD  +E+D E +++C   ++  SE  +  +S
Sbjct: 369 LDFLLEGAPQLTESYLDSKKEVDRELRVVCEQFIQQVSESFISPLS 414


>SB_26176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 535

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 105 IAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSD 142
           +  +S+PGP+ P    R F H     +VS L G    D
Sbjct: 221 VPSSSVPGPSTPKSSSRFFDHIK-TSIVSVLLGSTAMD 257


>SB_46131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 899

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 99  NLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGD 138
           N  +G +A N   G TNP ++  G S++ +    S+ NG+
Sbjct: 281 NQRSGNVASNQQGGDTNPQQENYGNSNYGNYSNFSSDNGN 320


>SB_38676| Best HMM Match : Arm (HMM E-Value=0.59)
          Length = 190

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/40 (22%), Positives = 22/40 (55%)

Query: 124 SHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEW 163
           +H  +V + ++ NG+G+  +  +L++  KP     +  +W
Sbjct: 151 NHVLEVLLKASYNGEGMESLLTHLLSRDKPDDVQLAAAKW 190


>SB_53088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/42 (35%), Positives = 23/42 (54%)

Query: 140 VSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFL 181
           V+D+     N+   G FH S  + TD+ P S+ +D V A+ L
Sbjct: 17  VADLWVGQKNDGTFGCFHTSHTQTTDKLPSSIQDDRVPAEIL 58


>SB_51562| Best HMM Match : HARP (HMM E-Value=0.00049)
          Length = 508

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/47 (25%), Positives = 28/47 (59%)

Query: 45 VVGVVHDASCKYIRESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKK 91
          ++G+V  ASC  +RE + ++VV +  S+  +    ++N  + +++ K
Sbjct: 10 LLGLVVLASCAPVREEIRENVVPIETSIDRLDPKSVVNNNEDVKNAK 56


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 20   DREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDMPSFL 79
            +R +K   L    + +  K L  A+     + A  KY +ESL K   E+   +Q++    
Sbjct: 1805 ERIKKLIELEEKAIETMEKKLEIAE-----YAAGLKYKKESLEKKCAELSAEIQNLQQSR 1859

Query: 80   IINKVDKLRSKKQLLTLVRNLTN 102
             +   DK R   ++  L   LTN
Sbjct: 1860 DVTAADKSRINDEVCQL--KLTN 1880


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,215,703
Number of Sequences: 59808
Number of extensions: 371076
Number of successful extensions: 816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 8
length of query: 268
length of database: 16,821,457
effective HSP length: 81
effective length of query: 187
effective length of database: 11,977,009
effective search space: 2239700683
effective search space used: 2239700683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)