Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000293-TA|BGIBMGA000293-PA|IPR009019|KH, prokaryotic
type
         (268 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to ...    74   9e-14
At5g66470.1 68418.m08382 expressed protein                             68   6e-12
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina...    32   0.46 
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina...    32   0.46 
At5g63800.1 68418.m08007 glycosyl hydrolase family 35 protein si...    30   1.4  
At1g65160.1 68414.m07388 ubiquitin carboxyl-terminal hydrolase f...    30   1.4  
At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly simila...    30   1.4  
At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly simila...    30   1.4  
At5g45150.1 68418.m05543 ribonuclease III family protein similar...    29   3.3  
At5g37530.1 68418.m04520 thiF family protein similar to SP|P3013...    27   10.0 

>At1g30960.1 68414.m03791 GTP-binding protein (ERG) identical to
           GTP-binding protein ERG SP:O82653 from [Arabidopsis
           thaliana]
          Length = 437

 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 24/259 (9%)

Query: 6   DTQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIR-ESLHKD 64
           DTQ+ F DTPG++  +    Y    + + +   S+   DV+ V+ D     +  +S    
Sbjct: 200 DTQVCFFDTPGLMLKKSGYGYKDIKARVQNAWTSVDLFDVLIVMFDVHRHLMSPDSRVVR 259

Query: 65  VVEMLNSVQD--MPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQERG 122
           +++ +   ++      L +NKVD +  KK LL +     +       +P           
Sbjct: 260 LIKYMGEEENPKQKRVLCMNKVDLVEKKKDLLKVAEEFQD-------LPA---------- 302

Query: 123 FSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLD 182
              +   FM+S L G GV D+ +YL++ A    +       +++  K++  + VR + LD
Sbjct: 303 ---YERYFMISGLKGSGVKDLSQYLMDQAVKKPWEEDAFTMSEEVLKNISLEVVRERLLD 359

Query: 183 FLHQEIPYNLKVKLDYYEEIDNEDKIICSVSVECPSERLMRLISGAGGGRLQQIKSSVRN 242
            +HQEIPY L+ +L  ++E+  +  +     +  P     +++ G GG ++ +I      
Sbjct: 360 HVHQEIPYGLEHRLVDWKEL-RDGSLRIEQHLITPKLSQRKILVGKGGCKIGRIGIEANE 418

Query: 243 DLIDVFRKTVILDLQLHVK 261
           +L  +  + V L LQ+ +K
Sbjct: 419 ELRRIMNRKVHLILQVKLK 437


>At5g66470.1 68418.m08382 expressed protein
          Length = 427

 Score = 68.1 bits (159), Expect = 6e-12
 Identities = 64/266 (24%), Positives = 123/266 (46%), Gaps = 30/266 (11%)

Query: 1   MCYCNDTQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRES 60
           +C   + Q++  DTPGV+   E+K + L   M+ +   +   AD V ++ DA CK    +
Sbjct: 171 ICSSPEYQMILYDTPGVI---EKKMHRLDTMMMKNVRDAAINADCVVILVDA-CK-TPTN 225

Query: 61  LHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQ- 119
           + + + E L  ++  P  L++       +KK L+                PG      + 
Sbjct: 226 IEEVLKEGLGDLEKKPPMLLV------MNKKDLIK---------------PGEIAKKLEW 264

Query: 120 ERGFSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAK 179
              F+   +V  VSA  G G+ D++E++++    G  +Y  +  ++   +  + + VR K
Sbjct: 265 YEKFTDVDEVIPVSAKYGHGIEDVKEWILSKLPFGPPYYPKDIVSEHPERFFVSEIVREK 324

Query: 180 FLDFLHQEIPYNLKVK-LDYYEEIDNEDKIICSVSVECPSERLMRLISGAGGGRLQQIKS 238
                  E+PY  +V  L Y      +D I   V V+  S+++  ++ G  G  L+ + +
Sbjct: 325 IFMQYRNEVPYACQVNVLSYKTRPAAKDFIQVEVVVDKNSQKI--ILIGKEGKALKTLAT 382

Query: 239 SVRNDLIDVFRKTVILDLQLHVKNNF 264
           + R D+ D  +K V L++++ VK N+
Sbjct: 383 AARLDIEDFLQKKVFLEVEVKVKENW 408


>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1065

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 39  SLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLL-TLV 97
           +L+ A+ V  V   + K  +E   +DV +++  V ++   +I  K ++L++ +++     
Sbjct: 783 TLKFAERVSGVELGAAKSSKEG--RDVRQLMEQVSNLKD-VIAKKDEELQNFQKVKGNNA 839

Query: 98  RNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSDI---REYLVNNAKPG 154
            +L  G ++   + GPT+P +   G S  +     S L G G SD+    EY   ++  G
Sbjct: 840 TSLKRG-LSNLRLVGPTSPRRHSIGASPNARRGKASGLFGRGTSDVDNCSEYSSKHSDSG 898

Query: 155 KFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNEDKIICSVSV 214
               S E    +      + A  AK +DF  ++      V+L    + D+ED+ +  +S 
Sbjct: 899 SQQSSDERKHQKDYHQPSKFAGAAKGIDFDDED------VELVGLADADSEDR-LSDISD 951

Query: 215 ECPS 218
            C S
Sbjct: 952 SCLS 955


>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
           region is similar to C-term region of kinesin motor
           protein GB:AAB51397 (Mus musculus); contains Pfam
           profile: PF00225 Kinesin motor domain
          Length = 1064

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 39  SLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLL-TLV 97
           +L+ A+ V  V   + K  +E   +DV +++  V ++   +I  K ++L++ +++     
Sbjct: 783 TLKFAERVSGVELGAAKSSKEG--RDVRQLMEQVSNLKD-VIAKKDEELQNFQKVKGNNA 839

Query: 98  RNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSDI---REYLVNNAKPG 154
            +L  G ++   + GPT+P +   G S  +     S L G G SD+    EY   ++  G
Sbjct: 840 TSLKRG-LSNLRLVGPTSPRRHSIGASPNARRGKASGLFGRGTSDVDNCSEYSSKHSDSG 898

Query: 155 KFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNEDKIICSVSV 214
               S E    +      + A  AK +DF  ++      V+L    + D+ED+ +  +S 
Sbjct: 899 SQQSSDERKHQKDYHQPSKFAGAAKGIDFDDED------VELVGLADADSEDR-LSDISD 951

Query: 215 ECPS 218
            C S
Sbjct: 952 SCLS 955


>At5g63800.1 68418.m08007 glycosyl hydrolase family 35 protein
           similar to beta-galactosidase GI:7939621 from
           [Lycopersicon esculentum]; contains Pfam profile
           PF01301: Glycosyl hydrolases family 35
          Length = 718

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 97  VRNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMV 132
           V N  NG   G + PGP +PNK +     ++  F V
Sbjct: 232 VINTCNGMKCGETFPGPNSPNKPKMWTEDWTSFFQV 267


>At1g65160.1 68414.m07388 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 309

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 198 YYEEIDNEDKII--CSVSVECPSERLMRLISGAGGGRLQQIKSSVRNDLIDVFRKTVILD 255
           Y+E  +   KI   C + +E P+ER  RLI  A    L+++KS+ ++   +   K + ++
Sbjct: 100 YFEVYEVAKKICNRCKLDLEYPAERSFRLIISASS--LREVKSAFKDFTFENIIKVIKMN 157

Query: 256 LQL 258
           L++
Sbjct: 158 LKM 160


>At1g24260.2 68414.m03059 MADS-box protein (AGL9) strongly similar
           to GB:O22456, MADS-box protein, Location of EST
           gb|H37053
          Length = 251

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 59  ESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLV-RNLTNGFIAGNSIPGPTNPN 117
           ESL + +   L  ++ + +  ++++++ L+SK+++LT   + L      G  +P   NPN
Sbjct: 129 ESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPN 188

Query: 118 KQE 120
           ++E
Sbjct: 189 QEE 191


>At1g24260.1 68414.m03058 MADS-box protein (AGL9) strongly similar
           to GB:O22456, MADS-box protein, Location of EST
           gb|H37053
          Length = 250

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 1/63 (1%)

Query: 59  ESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLV-RNLTNGFIAGNSIPGPTNPN 117
           ESL + +   L  ++ + +  ++++++ L+SK+++LT   + L      G  +P   NPN
Sbjct: 128 ESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQMPLQLNPN 187

Query: 118 KQE 120
           ++E
Sbjct: 188 QEE 190


>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles PF00035:
           Double-stranded RNA binding motif, PF00636 RNase3 domain
          Length = 957

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 204 NEDKIICSVSVECPSERLMRLISGAGGGRLQQIKSSVRNDLIDVFRKT----VILDLQLH 259
           NE KI+CSV +E P+      I G      ++ ++S  + +I     +    VI +LQ+H
Sbjct: 866 NEQKIVCSVKIEIPNIEGTFHIKGDAKPTKKEAENSSADHMIRALESSVMSLVITNLQMH 925


>At5g37530.1 68418.m04520 thiF family protein similar to SP|P30138
           Adenylyltransferase thiF (EC 2.7.7.-) {Escherichia
           coli}; contains Pfam profile PF00899: ThiF family
          Length = 457

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query: 86  KLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQERG 122
           KL S+  L  L  N    F+AGN I   T P+    G
Sbjct: 27  KLLSRSSLKQLNENPETNFLAGNGIESETRPDTVANG 63


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,610,619
Number of Sequences: 28952
Number of extensions: 281677
Number of successful extensions: 739
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 15
length of query: 268
length of database: 12,070,560
effective HSP length: 80
effective length of query: 188
effective length of database: 9,754,400
effective search space: 1833827200
effective search space used: 1833827200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)