GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000293-TA|BGIBMGA000293-PA|IPR009019|KH, prokaryotic
type
         (268 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.8  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   1.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   1.8  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.2  
AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory recept...    22   5.6  
AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory recept...    22   5.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 173 EDAVRAKFLDFLHQEIPYNLKVKLDYYEE 201
           ED V  K  +F   EI +NL V +D  E+
Sbjct: 302 EDVVHKKCSNFTLPEIQHNLDVLVDMCEQ 330


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 143 IREYLVNNAKPGKFHYSTEEWTDQTPK 169
           +R+YL  N    K HYS   + +Q  K
Sbjct: 331 LRKYLCKNEDETKNHYSKNTYNEQGNK 357


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 143 IREYLVNNAKPGKFHYSTEEWTDQTPK 169
           +R+YL  N    K HYS   + +Q  K
Sbjct: 223 LRKYLCKNEDETKNHYSKNTYNEQGNK 249


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 182  DFLHQEIPYNLKVKLDYYEE 201
            D LH + P++ KV   Y+E+
Sbjct: 1248 DLLHLDWPFDPKVNFTYFED 1267


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)

Query: 182  DFLHQEIPYNLKVKLDYYEE 201
            D LH + P++ KV   Y+E+
Sbjct: 1248 DLLHLDWPFDPKVNFTYFED 1267


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 73  QDMPSF--LIINKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTN 115
           QD  +F  L+    D    K  LLT+  N   G + G  IP  +N
Sbjct: 148 QDKATFNRLLQGLKDAFAPKGYLLTVAVNSIPGEVGGYDIPAMSN 192


>AM292377-1|CAL23189.2|  358|Tribolium castaneum gustatory receptor
           candidate 56 protein.
          Length = 358

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 191 NLKVKLDYYEEIDNEDKIICSVSVEC 216
           +L+ KL Y+EE+ +     CSV   C
Sbjct: 83  DLQQKLRYFEEVFSSLLSCCSVIFGC 108


>AM292342-1|CAL23154.2|  386|Tribolium castaneum gustatory receptor
           candidate 21 protein.
          Length = 386

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 191 NLKVKLDYYEEIDNEDKIICSVSVEC 216
           +L+ KL Y+EE+ +     CSV   C
Sbjct: 83  DLQQKLRYFEEVFSSLLSCCSVIFGC 108


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 34  GSCHKSLRCADVVG 47
           G+CH +  C D VG
Sbjct: 267 GACHNNGTCLDKVG 280


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,861
Number of Sequences: 317
Number of extensions: 2641
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 268
length of database: 114,650
effective HSP length: 56
effective length of query: 212
effective length of database: 96,898
effective search space: 20542376
effective search space used: 20542376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)