GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000293-TA|BGIBMGA000293-PA|IPR009019|KH, prokaryotic
type
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo...    29   0.92 
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    29   0.92 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   2.1  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.1  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    27   2.8  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    27   2.8  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    27   2.8  
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma...    27   3.7  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    26   4.9  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    26   6.5  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    26   6.5  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    26   6.5  
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   8.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   8.6  
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   8.6  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    25   8.6  

>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
           Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 457

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 95  TLVRNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSD 142
           T++ N     ++  S   PT+P + +R  S   +    S   GDG +D
Sbjct: 45  TVLNNPKQSTVSRKSFSAPTSPTRNKRSGSSSQEYKKSSGTRGDGAND 92


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 210 CSVSVECPSERLMRLISGAGGGRLQQIKSSVRNDLIDV 247
           C +S   P   + R ++G GGG L  + S + +D++ +
Sbjct: 113 CGISRSLPELCMARALAGIGGGGLGTMSSIISSDIVSL 150


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 155  KFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNEDK---IICS 211
            KF  + +E+T + P  +I     +K  D L  E  +   ++L Y + + +  +   ++ S
Sbjct: 1140 KFQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVGVLAS 1199

Query: 212  VSVECPSERL 221
             S+  PS ++
Sbjct: 1200 QSIGEPSTQM 1209


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 138 DGVSDIREYLVNNAKPGKF 156
           DG+  IREYLVN+ +P  F
Sbjct: 592 DGLIKIREYLVNDIEPSTF 610


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 236 IKSSVRNDLIDVFRKTVILDLQLHVKNNFLLAS 268
           ++  +RNDL ++ RK   +D++L   NN ++ S
Sbjct: 242 VQRDMRNDLSNLTRKVDRMDMRLSRNNNMIMRS 274


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 207 KIICSVSVECPSERLMRLISGAGGGRLQQIKSSVRNDLIDVFRKT 251
           KIIC+ ++   S  +  +++    GR++QI   V  DL+  F++T
Sbjct: 866 KIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLV-TFKET 909


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 21/107 (19%)

Query: 137 GDGVSDIREYLVNNAKPGKFHYSTEEWTDQTP-------KSVIED----AVRAK-FLDFL 184
           G G S   EYL      GK    T E  D+ P       KS++ D    A+R+K + D L
Sbjct: 166 GKGASVAAEYLREKNFKGKITIFTRE--DEVPYDRPKLSKSLLHDISKLALRSKEYYDDL 223

Query: 185 HQEIPYNLKV-KLDYYEEIDNEDKIICSVSVECPSERLMRLISGAGG 230
                +N  V K+D  E+     KI C  S E P+E   +LI   GG
Sbjct: 224 DISFHFNTDVTKIDLAEK-----KIYCG-SDEKPTESYTKLILATGG 264


>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 319

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 167 TPKSVIEDAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNED 206
           TPK+ +   + A  L +LH++  Y ++  ++  EE+D+E+
Sbjct: 26  TPKAKVIKPIPATVLKYLHEDSIY-VEQPMNTVEEVDSEE 64


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/69 (21%), Positives = 34/69 (49%)

Query: 82  NKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVS 141
           N +   ++K++L + ++ L    ++  + P P + +  E+G S+   +    A+     S
Sbjct: 335 NSIISSQNKEELPSSIKYLEKTIMSDQATPHPFSKSLSEKGSSYHKSLTSDFAMKHYIKS 394

Query: 142 DIREYLVNN 150
            IR  L+N+
Sbjct: 395 TIRSMLLND 403


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 66  VEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVRNLT 101
           VEM+++     +  I NK D+LR +K++  L+R +T
Sbjct: 103 VEMVDTADQFQN--IGNKEDELRVQKEIQALIRQIT 136


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 5   NDTQIVFLDTPGVVTDREQKKYNLPPSMLGSCHK 38
           ND  +  LDTPG++T    K  ++    L  C K
Sbjct: 196 NDMDVYMLDTPGIMTPSITKPEDMLKLSLVGCVK 229


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 7   TQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVV 66
           T I  +D PG+ TD      ++  + + +C + +   DVV  V +A   +   +   D +
Sbjct: 264 TDIALIDAPGLNTD------SMKTTSVFACQEEI---DVVVFVVNAENHFTLSAT--DFL 312

Query: 67  EMLNSVQDMPSFLIINKVDKLRSKKQLLTLV 97
               S +    F+I+NK D +R K++   L+
Sbjct: 313 RNA-STEKSHIFIIVNKFDNIRDKERCKRLI 342


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 151 AKPGKFHYS-----TEEWTDQTPKSVIEDAVRAKFLDFL 184
           AKP   H S      + W D+TP   +E AVR+  +D L
Sbjct: 121 AKPKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGL 159


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 114 TNPN-KQERGFSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQT 167
           TNP   Q R        F  S+LN  G  D   +   +A+PGK   +T    D T
Sbjct: 764 TNPAFPQSRTSWMMPQSFDTSSLNAPGAKDSSSFSSLHAQPGKSGIATMGVADNT 818


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 40  LRCADVVGVVHDASCKYIR-ESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVR 98
           L   D VG       +Y+R E+ HK ++ +LN V  +P+ +    V  L  +   +    
Sbjct: 224 LDARDPVGTRCGTVERYLRNEASHKHMILVLNKVDLVPTSVAAAWVKILAKEYPTIAFHA 283

Query: 99  NLTNGFIAGNSI 110
           ++ N F  G+ I
Sbjct: 284 SINNSFGKGSLI 295


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/51 (25%), Positives = 20/51 (39%)

Query: 139 GVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIP 189
           GVS I   + N+ KP         W   +   +I D  R   +D +   +P
Sbjct: 529 GVSQIVAIISNDVKPALTSLFQPNWYQSSNMKLIVDTFRDYIVDCIEHMVP 579


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,287,906
Number of Sequences: 5004
Number of extensions: 55044
Number of successful extensions: 149
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 17
length of query: 268
length of database: 2,362,478
effective HSP length: 72
effective length of query: 196
effective length of database: 2,002,190
effective search space: 392429240
effective search space used: 392429240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)