Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000293-TA|BGIBMGA000293-PA|IPR009019|KH, prokaryotic
type
(268 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0147 - 28022018-28022104,28022207-28022287,28022513-280226... 76 3e-14
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 52 5e-07
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114... 29 3.9
03_02_0501 - 8920458-8920646,8920918-8921024,8921136-8921352,892... 29 5.2
05_02_0117 - 6779121-6779582 28 6.8
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743... 28 9.0
06_03_0719 - 23845879-23845881,23846197-23846253,23846786-238470... 28 9.0
04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581 28 9.0
01_06_1300 + 36116511-36116636,36116672-36116734,36117782-361178... 28 9.0
>05_07_0147 -
28022018-28022104,28022207-28022287,28022513-28022614,
28022701-28022799,28023060-28023185,28023272-28023385,
28023478-28023618,28023717-28023862,28024011-28024386
Length = 423
Score = 76.2 bits (179), Expect = 3e-14
Identities = 69/266 (25%), Positives = 129/266 (48%), Gaps = 30/266 (11%)
Query: 1 MCYCNDTQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRES 60
+C + QI+ DTPGV+ +++ + L M+ + ++ AD V VV DA CK + E
Sbjct: 167 ICSEPEYQIILYDTPGVI---KKEMHKLDTMMMKNVRSAVGSADCVLVVVDA-CK-MPEK 221
Query: 61 LHKDVVEML-NSVQDMPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQ 119
+ + + E + N ++P L++NK D ++ + + + L +
Sbjct: 222 IDEILEEGVGNKDTELPVLLVLNKKDLIKPGE----IAKKL-----------------EW 260
Query: 120 ERGFSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAK 179
+ F++ DV +SA G GV DI+E++++ G +Y + ++ + + + VR K
Sbjct: 261 YQKFTNADDVIPISAKFGHGVDDIKEWILSKLPLGPAYYPKDIASEHPERFFVGEIVREK 320
Query: 180 FLDFLHQEIPYNLKVK-LDYYEEIDNEDKIICSVSVECPSERLMRLISGAGGGRLQQIKS 238
QEIPY +V + Y +D I + VE S+R +I G G ++ + +
Sbjct: 321 IFLQYRQEIPYACQVNVISYKSRPTAKDFIQVEILVEKESQR--SIILGKDGKAIKMLAT 378
Query: 239 SVRNDLIDVFRKTVILDLQLHVKNNF 264
+ R D+ D +K V L++ + VK N+
Sbjct: 379 ASRLDIEDFLQKKVYLEIMVKVKENW 404
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 52.0 bits (119), Expect = 5e-07
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 21/185 (11%)
Query: 7 TQIVFLDTPGVVTDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVV 66
TQI F DTPG++ + + S S+ D++ V+ D + ++++ + VV
Sbjct: 196 TQICFFDTPGLMLGHHGLPHRDVTVRVESAWSSINLYDLLIVLFDVN-RHLKTPDTR-VV 253
Query: 67 EMLNSV-----QDMPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQER 121
+++ + + L +NKVD + KK LL + + + +P ER
Sbjct: 254 KLIKRLGAEVNPNQKRILCMNKVDLVEDKKDLLKVAKEFED-------LPA------YER 300
Query: 122 GFSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFL 181
F FMVS L G GV D+ ++L+ A + T++ K++ + VR K L
Sbjct: 301 -FPLVCRYFMVSGLKGKGVKDLVQFLMEQAVRRPWDEEPTTMTEEVMKTISLEVVREKML 359
Query: 182 DFLHQ 186
D +HQ
Sbjct: 360 DHIHQ 364
>08_02_1023 -
23710825-23710950,23711037-23711120,23711367-23711492,
23711593-23711712,23712046-23712153,23712243-23712395,
23712505-23712600,23712716-23712800,23713278-23714268,
23714870-23714915,23715806-23715964,23716516-23716651,
23716734-23716900,23717366-23717696,23717827-23718062,
23718326-23718514
Length = 1050
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 105 IAGNSIPGPTNPNKQERGFSHFSDVFMVSALNGDGVSDIR-----EYLVNNAKPGKF 156
+ GN P + P++Q G S SD +++ L +GV ++ E+L+ PG F
Sbjct: 187 LVGNHYPACSRPDEQAMGLSAHSDHGLLTLLFQNGVDGLQVKHDGEWLLAKPLPGSF 243
>03_02_0501 -
8920458-8920646,8920918-8921024,8921136-8921352,
8921744-8922157
Length = 308
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 209 ICSVSVECPSERLMRLISGAGGGRLQQIKSSV 240
+C VSV ER++R ++G GG+L + ++V
Sbjct: 111 VCDVSVREQRERMLREVAGLYGGKLDILVNNV 142
>05_02_0117 - 6779121-6779582
Length = 153
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 147 LVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLK--VKLDYYE 200
L+ P K +EEW ++ KSVI+ A K D +E ++ V+ YYE
Sbjct: 61 LLRTNNPVKVDGLSEEWVEKNSKSVIKTANLLKKADDSFEEFQKQVRKEVEKGYYE 116
>10_08_0573 +
18872720-18872781,18873261-18873610,18873917-18874334,
18875172-18877180,18877390-18877398,18880291-18880398,
18880399-18880469,18880769-18881785
Length = 1347
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 174 DAVRAKFLDFLHQEIPYNLKVKLDYYEEIDNEDKIICS 211
DAV FL L Q LK KL++ +IDNE + + S
Sbjct: 52 DAVLPAFLQVLFQNAMELLKKKLEFACDIDNEGQKLMS 89
>06_03_0719 -
23845879-23845881,23846197-23846253,23846786-23847011,
23847118-23847245,23847339-23847444,23847543-23847622,
23847773-23847870,23848015-23848128,23848239-23848379,
23849012-23849096,23849789-23850016
Length = 421
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 137 GDGVSDIREYLVNNAKPGKF-HYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVK 195
GDG D+ +N F ++ +TD KS+ D A+F EIP K
Sbjct: 261 GDGPWDMMHQFDDNIPARSFDNFQFVNFTDIMSKSIAADRKEAEFALSALMEIPTQYKAT 320
Query: 196 LD 197
LD
Sbjct: 321 LD 322
>04_04_1259 + 32171412-32171805,32173341-32174193,32174263-32174581
Length = 521
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 226 SGAGGGRLQQIKSSVRNDLIDVFR-KTVILDLQLHVKNNFLLAS 268
+GAG G++ +S +IDVFR +T L L V N LLAS
Sbjct: 302 NGAGAGKVVDSSASASGSIIDVFRSRTTRFRLVLSVVIN-LLAS 344
>01_06_1300 +
36116511-36116636,36116672-36116734,36117782-36117833,
36118144-36118224,36118651-36118775,36118831-36118934,
36119487-36119615,36119899-36121054
Length = 611
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 75 MPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGNSIPGPTNPNKQERGFSHFSDVFMVS- 133
M L +NK + SK Q T R+ +GF++ +S+P +E S V +V+
Sbjct: 273 MEGHLDLNKAPIINSKDQPGTAHRSNCSGFLSRSSLPTAQPLTSREASVVDGSAVTLVAQ 332
Query: 134 ALNGDGV 140
AL D V
Sbjct: 333 ALESDSV 339
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.137 0.400
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,028,529
Number of Sequences: 37544
Number of extensions: 331904
Number of successful extensions: 798
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 12
length of query: 268
length of database: 14,793,348
effective HSP length: 81
effective length of query: 187
effective length of database: 11,752,284
effective search space: 2197677108
effective search space used: 2197677108
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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