GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000293-TA|BGIBMGA000293-PA|IPR009019|KH, prokaryotic
type
         (268 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical pr...    69   5e-12
Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical pr...    69   5e-12
AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical ...    33   0.21 
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z69360-9|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AF000266-7|AAC71173.1|  212|Caenorhabditis elegans Hypothetical ...    28   6.1  

>Z47075-7|CAA87384.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 36/129 (27%), Positives = 71/129 (55%), Gaps = 2/129 (1%)

Query: 122 GFSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFL 181
           G+S F  VF VS+LNG+G+ ++R++L++ +  G++       T ++ + +  D++RA  L
Sbjct: 249 GWSGFERVFFVSSLNGEGIDELRDHLMSISPQGEWKMQDGMPTGESAQQLCIDSIRAAVL 308

Query: 182 DFLHQEIPYNLKVKLDYYEEIDNEDKIICSVSVECPSERLMRLISGAGGGRLQQIKSSVR 241
           D    ++ Y +++++  +EE     +I+    + C   R   LI G GG R+ +I   V 
Sbjct: 309 DTTPSDVAYTVQIRISEWEEQGEVLQIV--GEIRCQKPRDGSLIIGKGGKRISEIGRRVN 366

Query: 242 NDLIDVFRK 250
             L  +F++
Sbjct: 367 EHLHSLFQR 375



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 9/112 (8%)

Query: 4   CND-TQIVFLDTPGVVTD---REQKKYNLPPS---MLGSCHKSLRCADVVGVVHDASCKY 56
           C+D TQ+VF+D+PG V+    R+  K     S   +L    ++L+ A  V VV D++   
Sbjct: 77  CSDSTQLVFVDSPGAVSTSHVRQTMKKTSATSGDRVLQDPERALQRAQHVLVVQDSTAP- 135

Query: 57  IRESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGN 108
               +H  V+ ML+    +PS L++NK+D +  +  LL LV  LTNG ++ N
Sbjct: 136 -GAYIHHRVLHMLHRYSHVPSILVMNKIDLVMRRSDLLPLVEILTNGQLSDN 186


>Z36752-8|CAA85330.1|  394|Caenorhabditis elegans Hypothetical
           protein E02H1.2 protein.
          Length = 394

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 36/129 (27%), Positives = 71/129 (55%), Gaps = 2/129 (1%)

Query: 122 GFSHFSDVFMVSALNGDGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFL 181
           G+S F  VF VS+LNG+G+ ++R++L++ +  G++       T ++ + +  D++RA  L
Sbjct: 249 GWSGFERVFFVSSLNGEGIDELRDHLMSISPQGEWKMQDGMPTGESAQQLCIDSIRAAVL 308

Query: 182 DFLHQEIPYNLKVKLDYYEEIDNEDKIICSVSVECPSERLMRLISGAGGGRLQQIKSSVR 241
           D    ++ Y +++++  +EE     +I+    + C   R   LI G GG R+ +I   V 
Sbjct: 309 DTTPSDVAYTVQIRISEWEEQGEVLQIV--GEIRCQKPRDGSLIIGKGGKRISEIGRRVN 366

Query: 242 NDLIDVFRK 250
             L  +F++
Sbjct: 367 EHLHSLFQR 375



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 9/112 (8%)

Query: 4   CND-TQIVFLDTPGVVTD---REQKKYNLPPS---MLGSCHKSLRCADVVGVVHDASCKY 56
           C+D TQ+VF+D+PG V+    R+  K     S   +L    ++L+ A  V VV D++   
Sbjct: 77  CSDSTQLVFVDSPGAVSTSHVRQTMKKTSATSGDRVLQDPERALQRAQHVLVVQDSTAP- 135

Query: 57  IRESLHKDVVEMLNSVQDMPSFLIINKVDKLRSKKQLLTLVRNLTNGFIAGN 108
               +H  V+ ML+    +PS L++NK+D +  +  LL LV  LTNG ++ N
Sbjct: 136 -GAYIHHRVLHMLHRYSHVPSILVMNKIDLVMRRSDLLPLVEILTNGQLSDN 186


>AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical
           protein Y46H3D.7 protein.
          Length = 333

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 159 STEEWTDQTPKSVIEDAVRA--KFLDFLHQEIPYNLKVKLDYYEEIDNEDKIICSVSVEC 216
           S ++ T  + K+++E+   A    LD L +E   N + KL Y+EE+D+    +CSV +  
Sbjct: 81  SKKQKTSSSEKTILEELNEAYQNLLD-LRKETFRNQEAKLTYFEEMDD----VCSVDLSL 135

Query: 217 PSERLMRLISGAGGGRLQQIKSSVRNDLID 246
             E L+R           Q +  V+N L++
Sbjct: 136 VVETLVRTFYKMAPMEDDQQRLLVKNFLVE 165


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 19  TDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDMPSF 78
           TDR ++   +      +CH  LR  D V +VH      I +S +K V    NS    P  
Sbjct: 91  TDRRRRLQGVARDCGHACHLRLRSDDAVYIVHLHRWNQIPDSHNKSVPHFSNS-NFAPMV 149

Query: 79  LIINKVDKLR 88
           L ++  +++R
Sbjct: 150 LYLDSEEEVR 159


>Z69360-9|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
           protein F25H8.3 protein.
          Length = 2165

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 19  TDREQKKYNLPPSMLGSCHKSLRCADVVGVVHDASCKYIRESLHKDVVEMLNSVQDMPSF 78
           TDR ++   +      +CH  LR  D V +VH      I +S +K V    NS    P  
Sbjct: 91  TDRRRRLQGVARDCGHACHLRLRSDDAVYIVHLHRWNQIPDSHNKSVPHFSNS-NFAPMV 149

Query: 79  LIINKVDKLR 88
           L ++  +++R
Sbjct: 150 LYLDSEEEVR 159


>Z70035-3|CAA93863.1|  435|Caenorhabditis elegans Hypothetical
           protein R09D1.3 protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%)

Query: 138 DGVSDIREYLVNNAKPGKFHYSTEEWTDQTPKSVIEDAVRAKFLDFLHQEIPYNLKVKLD 197
           +G S +  Y V +        S E W + T    + D     F  + +++   ++KVKLD
Sbjct: 336 EGRSQLSRYTVEHED---MELSPESWDNATQTPYVLDLKTRTFFTYENEK---SIKVKLD 389

Query: 198 YYEEIDNEDKIICSVSVECPSERLMRLIS 226
           Y  ++D     I SV ++   +RL  L+S
Sbjct: 390 YVNKMDLGGVWIWSVDMD---DRLNTLLS 415


>AF000266-7|AAC71173.1|  212|Caenorhabditis elegans Hypothetical
           protein W08F4.9 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 179 KFLDFLHQEIPYNLKVKLDYYEEIDNEDKIICSV 212
           KFLD +H+ +  N ++ ++    ++ E K ICS+
Sbjct: 17  KFLDHIHEVLHQNRQIHINLENGMNEEIKTICSL 50


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,993,494
Number of Sequences: 27539
Number of extensions: 298158
Number of successful extensions: 733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 9
length of query: 268
length of database: 12,573,161
effective HSP length: 80
effective length of query: 188
effective length of database: 10,370,041
effective search space: 1949567708
effective search space used: 1949567708
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)