GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000293-TA|BGIBMGA000293-PA|IPR009019|KH, prokaryotic
type
         (268 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 46  VGVVHDASCKYIRESLHKDVVEM 68
           V V HD SC Y+   + K   +M
Sbjct: 91  VVVTHDGSCLYVPPGIFKSTCKM 113


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 46  VGVVHDASCKYIRESLHKDVVEM 68
           V V HD SC Y+   + K   +M
Sbjct: 91  VVVTHDGSCLYVPPGIFKSTCKM 113


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 46  VGVVHDASCKYIRESLHKDVVEM 68
           V V HD SC Y+   + K   ++
Sbjct: 91  VVVTHDGSCLYVPPGIFKSTCKI 113


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 46  VGVVHDASCKYIRESLHKDVVEM 68
           V V HD SC Y+   + K   ++
Sbjct: 91  VVVTHDGSCLYVPPGIFKSTCKI 113


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 152 KPGKFHYSTEEWTDQTPKS 170
           K G + Y + EW   TP++
Sbjct: 125 KTGSYDYPSPEWDTVTPEA 143


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,593
Number of Sequences: 429
Number of extensions: 3605
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 268
length of database: 140,377
effective HSP length: 57
effective length of query: 211
effective length of database: 115,924
effective search space: 24459964
effective search space used: 24459964
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)