GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000292-TA|BGIBMGA000292-PA|IPR013027|FAD-dependent
pyridine nucleotide-disulphide oxidoreductase,
IPR006258|Dihydrolipoamide dehydrogenase, IPR012999|Pyridine
nucleotide-disulphide oxidoreductase, class I, active site,
IPR001327|Pyridine nucleotide-disulphide oxidoreductase, NAD-binding
region, IPR000815|Mercuric reductase, IPR004099|Pyridine
nucleotide-disulphide oxidoreductase dimerisation region,
IPR001100|Pyridine nucleotide-disulphide oxidoreductase, class I
         (496 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   5.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   7.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
          isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 42 GGYVAAIKAAQLGMKVVSVEKDPTLGGTCLNVGCIPS 78
          GG +A++ A    + +V  E    L GT       P+
Sbjct: 17 GGTIASVVAGAASLTLVKAETPEHLAGTSTTAAATPT 53


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 312 DKVGIALDDRGRI--PVNNKFQTTVPGIYAIGDVIHGPMLAHKAEDEGIVCVEGIKGMPV 369
           D V    ++RG +  P+ N+++     IY +G+V      A+   +   VC  G+  MP 
Sbjct: 764 DLVQKKCEERGILFMPIPNRYREAKQ-IYKVGNV-----QAYIDGNVVFVCHNGMNWMPT 817

Query: 370 HFN 372
           H N
Sbjct: 818 HLN 820


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.137    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,857
Number of Sequences: 429
Number of extensions: 5456
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 2
length of query: 496
length of database: 140,377
effective HSP length: 60
effective length of query: 436
effective length of database: 114,637
effective search space: 49981732
effective search space used: 49981732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)