Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000291-TA|BGIBMGA000291-PA|IPR002076|GNS1/SUR4 membrane
protein
         (283 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    25   0.48 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   4.5  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.5  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   5.9  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.9  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 136 TPGGHSTFFGMLNTFV 151
           TPGGHS F+G L   V
Sbjct: 194 TPGGHSGFWGQLGAAV 209


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 66  LIWYNLFQVIFSCWL--FYETVNGC 88
           ++WY +F+     WL    E V GC
Sbjct: 773 MVWYQMFEYAIGHWLQKATEHVIGC 797


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 66  LIWYNLFQVIFSCWL--FYETVNGC 88
           ++WY +F+     WL    E V GC
Sbjct: 773 MVWYQMFEYAIGHWLQKATEHVIGC 797


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 66  LIWYNLFQVIFSCWL--FYETVNGC 88
           ++WY +F+     WL    E V GC
Sbjct: 773 MVWYQMFEYAIGHWLQKATEHVIGC 797


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 2/25 (8%)

Query: 66  LIWYNLFQVIFSCWL--FYETVNGC 88
           ++WY +F+     WL    E V GC
Sbjct: 773 MVWYQMFEYAIGHWLQKATEHVIGC 797


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 62  LKQVLIWYNLFQVIFSCWLFY 82
           +K    W+ L QV+F C+  Y
Sbjct: 134 MKNFYFWFVLKQVMFLCYSTY 154


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)

Query: 113  HVSKLHVIHHGIMP 126
            H+SK+H +  G++P
Sbjct: 1072 HLSKMHFVKDGVIP 1085


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 68  WYNLFQVIFSCWLFYETVNGCWWYY 92
           W  L + + SC    +T   C++YY
Sbjct: 94  WTRLLKNLESCAKIKKTKRYCYYYY 118


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 109 KKFDHVSKLHVIHHGIMPMSVWFGVKFT 136
           K  + +SKLH + + +  M +W   K T
Sbjct: 103 KLIEVISKLHKLDNKLKHMLIWKSYKRT 130


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.330    0.141    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,444
Number of Sequences: 317
Number of extensions: 2991
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 9
length of query: 283
length of database: 114,650
effective HSP length: 56
effective length of query: 227
effective length of database: 96,898
effective search space: 21995846
effective search space used: 21995846
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 43 (21.4 bits)