Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000291-TA|BGIBMGA000291-PA|IPR002076|GNS1/SUR4 membrane
protein
(283 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb... 60 3e-10
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 50 4e-07
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.75
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 29 1.00
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c... 28 1.7
SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces pom... 27 2.3
SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|... 26 7.0
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 26 7.0
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 7.0
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 25 9.3
>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 60.5 bits (140), Expect = 3e-10
Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 9/77 (11%)
Query: 117 LHVIHHGIMPMSVWFGVKFTPGGHSTFFGM--LNTFVHIVMYSYYLLAALGPQVQKYLWW 174
LH HHGI + + + G S +G+ LN +VH++MYSYY LAA G +V WW
Sbjct: 164 LHCYHHGITALLCFTQLL---GRTSVQWGVIGLNLYVHVIMYSYYFLAACGRRV----WW 216
Query: 175 KKYLTALQMVQFVLVFI 191
K+++T +Q++QFVL I
Sbjct: 217 KQWVTRVQIIQFVLDLI 233
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 50.0 bits (114), Expect = 4e-07
Identities = 48/183 (26%), Positives = 76/183 (41%), Gaps = 34/183 (18%)
Query: 31 SPFPTLAICLTYVFIVKVLGPKLMENRKPFELKQVLIWYNL-FQV--------------- 74
S P +A + +++ ++G ++M NR+P L+++ +YNL F +
Sbjct: 33 SSAPVVATIIISYYLLILVGGRIMRNRQPIRLQKIFQYYNLTFSIASAILALLIFEQVAP 92
Query: 75 -IFSCWLFYETVNGCWWY----------YXXXXXXXXXXXXXVMRKKFDHVSKLHVIHHG 123
I+ F+ N W Y V+RKK + LH HHG
Sbjct: 93 AIYKHGFFFSICNEKAWTQPLVFLYYCAYISKFLELTDTFFLVLRKK--PLQFLHCYHHG 150
Query: 124 IMPMSVWFGVKFTPGGHSTFFGMLNTFVHIVMYSYYLLAALGPQVQKYLWWKKYLTALQM 183
+ V+ + S +N VH+ MY YY L A G +V WKK++T Q+
Sbjct: 151 ATAVLVYTQIVGRTS-ISWLIIEINLLVHVTMYYYYYLVAKGIRVP----WKKWVTRFQI 205
Query: 184 VQF 186
VQF
Sbjct: 206 VQF 208
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 29.1 bits (62), Expect = 0.75
Identities = 38/174 (21%), Positives = 71/174 (40%), Gaps = 17/174 (9%)
Query: 38 ICLTYVFIVKVLGPKLM----ENRKPFELKQVLIWYNLFQVIFSCWLFYETVNGCWW--Y 91
+ + Y+ + ++ P LM N F + IWYN+F V+F+ W F T +W +
Sbjct: 56 LLVEYLSFLLMIVPLLMLGDQVNDFTFSIIHTSIWYNVF-VVFTVWAF--TREKLYWTAF 112
Query: 92 YX---XXXXXXXXXXXXVMRKKFDHVSKLHVIHHGIMPMSVWFGV-KFTPGGHSTFFGML 147
+ +R F + + + + S+WF V F+ H T G
Sbjct: 113 FSLCLFSSSFTMYGQSLRLRNGFVEMISMKLPSKLVFGKSLWFVVYAFSAALHCTGIG-C 171
Query: 148 NTFVHIVMYSYYLLAALGPQVQKYLWWKKYLTALQMVQFVL--VFIHAFQLLFI 199
F ++ ++ ++ L P + + W ++A + + +FIH F L I
Sbjct: 172 RVFSNVFIW-FFAAMYLVPILGFHDWALSLVSAYLFLSIGIGQMFIHLFALQHI 224
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 28.7 bits (61), Expect = 1.00
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 36 LAICLTYVFIVKVLGPKLMENRKPFELKQVLI 67
L + ++++ KV+ PK +EN+ F +++LI
Sbjct: 369 LTVAFYFIYLRKVMIPKFVENKGKFPAEEILI 400
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 140 HSTFFGMLNTFVHIVMYSYYLLAALGPQV 168
+S +FG L+++ +++M YYL+ + P V
Sbjct: 202 NSPYFGTLSSYGYVLMVLYYLIHVIKPPV 230
>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 111 FDHVSKLHVIHHGIMPMSVWFGVK 134
FDH LHV H ++ ++ WFGVK
Sbjct: 165 FDH---LHVGHKVLLTLTAWFGVK 185
>SPAC688.13 |scn1||TatD DNase family Scn1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 202 DYPRAFVWWIGMHAVLFYYLFSDFYKQAYLRKSKKAKSMMKV 243
+YP + G+H YYL+ D K +++K K K+
Sbjct: 48 EYPGKVIPSFGIHPWFSYYLYDDLDKDLQSSETRKKKHYEKI 89
>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
Isd11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 102
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 221 LFSDFYKQAYLRKSKKAKSMMKVEDEPVKYE 251
LF Y++ +R+++ +KVE +P K+E
Sbjct: 21 LFPYTYREYTIRRTRDKFKELKVESDPAKFE 51
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 245 DEPVKYETKEMKLPLLNGFSNGS--ALGDVRQRMAGAV 280
D+P+K++T E K N S+ A DV+ A AV
Sbjct: 343 DKPIKFDTPEKKFTFTNPLSSKKLPASSDVKPPSAAAV 380
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 182 QMVQFVLVFIHAFQLLFIDCDYPRAFVWWIGMHAVLFYYLFSDFYKQAYLRKS 234
Q++ +FI F+L+FI+ Y + + L ++LF+ F + Y K+
Sbjct: 1420 QLIFTAAIFIMNFKLVFIEMQYINIISIIVLVLTSLAWFLFNIFISEHYPDKN 1472
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 221 LFSDFYKQAYLRKSKKAKS 239
L SDFYK +L+++ K+KS
Sbjct: 76 LQSDFYKDRFLKQTAKSKS 94
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.330 0.141 0.469
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,260,597
Number of Sequences: 5004
Number of extensions: 51094
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 12
length of query: 283
length of database: 2,362,478
effective HSP length: 72
effective length of query: 211
effective length of database: 2,002,190
effective search space: 422462090
effective search space used: 422462090
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 53 (25.4 bits)
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