GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000291-TA|BGIBMGA000291-PA|IPR002076|GNS1/SUR4 membrane
protein
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0821 - 27960414-27961253                                         44   1e-04

>03_05_0821 - 27960414-27961253
          Length = 279

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 18/139 (12%)

Query: 117 LHVIHHG--IMPMSVWFGVK--FTPGGHSTFFGMLNTFVHIVMYSYYLLAALGPQVQKYL 172
           LHV HH   I    +W   +    P   +T     N  VH+ MY YYL  +LG +     
Sbjct: 149 LHVYHHAAVIAMCYLWLATRQSLMPIALAT-----NAAVHVAMYGYYLCCSLGLRWPPR- 202

Query: 173 WWKKYLTALQMVQFVLVFIHAFQLLFI-----DCDYPRAFVWWIGMHAVLFYYLFSDFYK 227
            WK+ +T LQ+ QF+  F  +  +L+       C+    + +    +A L   LF DF+ 
Sbjct: 203 -WKRAVTELQIAQFLFSFAASAVMLWRHFAAGGCEGMAGWAFNAVFNASLL-ALFLDFHG 260

Query: 228 QAY-LRKSKKAKSMMKVED 245
            AY   K KK++S +  E+
Sbjct: 261 AAYAAAKGKKSRSEVVKEE 279


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.330    0.141    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,681
Number of Sequences: 37544
Number of extensions: 286753
Number of successful extensions: 688
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 685
Number of HSP's gapped (non-prelim): 2
length of query: 283
length of database: 14,793,348
effective HSP length: 81
effective length of query: 202
effective length of database: 11,752,284
effective search space: 2373961368
effective search space used: 2373961368
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)