GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000291-TA|BGIBMGA000291-PA|IPR002076|GNS1/SUR4 membrane
protein
         (283 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein simil...    52   3e-07
At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein simil...    51   8e-07
At4g31730.1 68417.m04504 expressed protein                             35   0.071
At1g10760.1 68414.m01231 starch excess protein (SEX1) identical ...    29   3.5  
At2g25310.1 68415.m03028 expressed protein                             29   4.7  
At1g15520.1 68414.m01867 ABC transporter family protein similar ...    28   8.2  

>At3g06460.1 68416.m00748 GNS1/SUR4 membrane family protein similar
           to SP|P25358 Elongation of fatty acids protein 2 (GNS1
           protein) (V-SNARE bypass mutant gene 2 protein)
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01151: GNS1/SUR4 family
          Length = 298

 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 5/81 (6%)

Query: 106 VMRKKFDHVSKLHVIHHGIMPMSVWFGVKFTPGGHSTFFGMLNTFVHIVMYSYYLLAALG 165
           ++ K    +S LHV HH  + +  +  ++           +LN+ VH++MY YY L A+G
Sbjct: 139 ILNKSIQRLSFLHVYHHATVVILCYLWLRTRQSMFPVGL-VLNSTVHVIMYGYYFLCAIG 197

Query: 166 PQVQKYLWWKKYLTALQMVQF 186
            + +    WKK +T  QMVQF
Sbjct: 198 SRPK----WKKLVTNFQMVQF 214


>At3g06470.1 68416.m00749 GNS1/SUR4 membrane family protein similar
           to SP|P39540 Elongation of fatty acids protein 1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01151: GNS1/SUR4 family
          Length = 278

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 11/133 (8%)

Query: 106 VMRKKFDHVSKLHVIHHGIMPMSVWFGVKFTPGGHSTFFGMLNTFVHIVMYSYYLLAALG 165
           ++ K    +S LHV HH  + +  +  ++ T         + N+ VH++MY YY L A+G
Sbjct: 142 ILGKSIQRLSFLHVYHHATVVVMCYLWLR-TRQSMFPIALVTNSTVHVIMYGYYFLCAVG 200

Query: 166 PQVQKYLWWKKYLTALQMVQFVLVF-IHAFQL---LF-IDCDYPRAFVWWIGMHAVLFYY 220
            + +    WK+ +T  Q+VQFV  F +  + L   LF   C     + +    +A L   
Sbjct: 201 SRPK----WKRLVTDCQIVQFVFSFGLSGWMLREHLFGSGCTGIWGWCFNAAFNASLL-A 255

Query: 221 LFSDFYKQAYLRK 233
           LFS+F+ + Y++K
Sbjct: 256 LFSNFHSKNYVKK 268


>At4g31730.1 68417.m04504 expressed protein
          Length = 158

 Score = 34.7 bits (76), Expect = 0.071
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 107 MRKKFDHVS-KLHVIHHGIMPMSVWFG-VKFTPGGHSTFFGMLNTFVHIVMYSYYLLAAL 164
           ++ KF+ V+    V HHG+ P S W   V +  GG +   G++   + I+  SY+ L++ 
Sbjct: 6   VQSKFEDVATSTSVNHHGVTPQSPWHSPVPYLFGGLAAMLGLIAFALLILACSYWRLSSS 65

Query: 165 GPQ 167
           G +
Sbjct: 66  GEE 68


>At1g10760.1 68414.m01231 starch excess protein (SEX1) identical to
           SEX1 [Arabidopsis thaliana] GI:12044358; supporting cDNA
           gi|12044357|gb|AF312027.1|AF312027
          Length = 1399

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 228 QAYLRKSKKAKSMMKVEDEPVKYETKEMKLPLLNGFSNGSALGDVRQRM 276
           QAYLR  +K K M   E E  +YE    +  L      G+++ D+R ++
Sbjct: 219 QAYLRWERKGKQMYNPEKEKEEYEA--ARTELREEMMRGASVEDLRAKL 265


>At2g25310.1 68415.m03028 expressed protein 
          Length = 210

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 28  LMSSPFPTLAICLTYVFIVKVLGPKLMENRKPFELKQ 64
           +MS     + + + ++ +V  L PKLMEN  P E+KQ
Sbjct: 150 IMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKQ 186


>At1g15520.1 68414.m01867 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1423

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 204 PRAFVWWIGMHAVL-FYYLFSDFYKQAYLRKSKKAKSMMKVEDEPVKYETK 253
           P A+ +WIG  A+L F  LF+  +  A    +   K    + +EP   ET+
Sbjct: 746 PHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETE 796


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.330    0.141    0.469 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,377,678
Number of Sequences: 28952
Number of extensions: 248372
Number of successful extensions: 753
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 6
length of query: 283
length of database: 12,070,560
effective HSP length: 80
effective length of query: 203
effective length of database: 9,754,400
effective search space: 1980143200
effective search space used: 1980143200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)