Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000290-TA|BGIBMGA000290-PA|IPR005532|Protein of unknown
function DUF323
         (235 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    31   0.19 
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.78 
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   1.8  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   2.4  
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   4.1  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    26   5.5  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   7.2  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.6  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 6/125 (4%)

Query: 71  LFLNNTFKEKIKDFRVAQATWWYKVFGANWNHPFGPDSSITDVMDHPVIHASWNDAKAYC 130
           +FLN  FKEK++D +V       K+F   +N       + TD    PV   + N A+   
Sbjct: 89  IFLN-LFKEKLEDRQVPNEAEVEKLFAPIFNRKSAQLENETDTKSLPVEANNDNSARKKN 147

Query: 131 KWRRARLPTEIEWEAACRGGHQDIKYPWGNKLFPERQ----YKANIWQGTFPHHNSAKDN 186
           ++   +   + +   A + G + ++  W +++  E Q    Y +     +    NS   +
Sbjct: 148 EYEMKKKGAQSKQTNAPKKGKKQLR-KWDDQITEEEQAALNYSSQASSASQTVDNSQLSS 206

Query: 187 FVGTN 191
            VG N
Sbjct: 207 IVGNN 211


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 4   LVPGGEYQYGTDDIVIENDNEGPKRIVKV-KSFFLDKYEVSNQDFKHFTRVTNYKTEADI 62
           ++PG +Y+   +   IE + E  +R+V+V K+       V      H  RV  +  E ++
Sbjct: 863 VIPGTQYEELLEAEKIEKEEEKIERVVEVMKTLHPAHLSVFRFLIAHLGRVCKH-AEKNL 921

Query: 63  FGDSFVFALFLNNTFKEKIKDFRVAQAT 90
                V  +F     ++K+  F +  AT
Sbjct: 922 MNSKNVSTVFAPTLMRDKVNRFDLQHAT 949


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 144 EAACRGGHQDIKYPWGNKLFPERQYKANIWQGTFPHHNSAKDNFVGTNPVELFPQNDF 201
           +A+     Q+I Y W ++  P  QY+ N+ +   P+ N   +NF  T P   F Q  +
Sbjct: 224 QASTAPNPQEINYQWSHEYRPHTQYQNNLLRAQ-PNVNC--ENFPTTVPNYPFQQPSY 278


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/65 (24%), Positives = 24/65 (36%)

Query: 37  LDKYEVSNQDFKHFTRVTNYKTEADIFGDSFVFALFLNNTFKEKIKDFRVAQATWWYKVF 96
           L    VSN  F    + T    E      SFVF L +   F + +       + WW ++ 
Sbjct: 353 LSTKSVSNASFPLDFQQTTVDAELAFVDRSFVFDLEIKKLFVQTLTPLNETCSEWWGELL 412

Query: 97  GANWN 101
            +  N
Sbjct: 413 ASTCN 417


>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 151 HQDIKYPWGNKLFPERQYKANIWQGTFPHHNSAKDNFVGTNPV--ELFPQNDFGLH 204
           +Q +K P  +   P +   A +   + P  N  ++ F+ TNP+  E F  +D  +H
Sbjct: 105 NQSVKIPPHSPTLPVQNASAFVKPISVPLGNVKEEKFLDTNPIGAESFESSDGEMH 160


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 161 KLFPERQYKANIWQGTFPH 179
           KL+PE Q K +I+QG   H
Sbjct: 126 KLWPEEQNKPSIYQGVISH 144


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 36  FLDKYEVSNQDFKHFTRVTNYKTEADI 62
           F D    +N  F HF R TN K +A +
Sbjct: 95  FADLAVAANTKFTHFIRTTNPKHQASV 121


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 4  LVPGGEYQYGTDDIVIENDNEGPKRIVKVKSFF 36
          ++P G +Q   D IV+E +   PK++ + +  F
Sbjct: 17 VLPKGSFQKKDDSIVLEQELSTPKQVNQARPKF 49


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,312,845
Number of Sequences: 5004
Number of extensions: 58952
Number of successful extensions: 102
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 96
Number of HSP's gapped (non-prelim): 8
length of query: 235
length of database: 2,362,478
effective HSP length: 71
effective length of query: 164
effective length of database: 2,007,194
effective search space: 329179816
effective search space used: 329179816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)