Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000290-TA|BGIBMGA000290-PA|IPR005532|Protein of unknown
function DUF323
         (235 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51290| Best HMM Match : No HMM Matches (HMM E-Value=.)             198   4e-51
SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)               127   9e-30
SB_7016| Best HMM Match : No HMM Matches (HMM E-Value=.)               59   3e-09
SB_33242| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_1353| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.038
SB_55507| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.038
SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_52950| Best HMM Match : Neuralized (HMM E-Value=5)                  29   4.4  
SB_27065| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  
SB_55076| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_30579| Best HMM Match : RVT_1 (HMM E-Value=0.00034)                 28   5.8  
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_54490| Best HMM Match : AMP-binding (HMM E-Value=4.2039e-45)        28   7.7  

>SB_51290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score =  198 bits (482), Expect = 4e-51
 Identities = 101/225 (44%), Positives = 130/225 (57%), Gaps = 34/225 (15%)

Query: 2   MVLVPGGEYQYGTDDIVIENDNEGPKRIVKVKSFFLDKYEVSNQDFKHFTRVTNYKTEAD 61
           MV + GGE+  GT+   I  D EGP R V+++ F++D YEVSN++F+             
Sbjct: 85  MVRIEGGEFTMGTNKPYIVVDGEGPARKVRLRPFYMDIYEVSNREFE------------- 131

Query: 62  IFGDSFVFALFLNNTFKEKIKDFRVAQATWWYKVFGANWNHPFGPDSSIT--------DV 113
                    LF+N T  +      VA A WW  V GA W  P GPD+ I         D 
Sbjct: 132 ---------LFVNATGHKT----EVAAAPWWLPVKGAYWRRPEGPDTDIRESIKMIFFDR 178

Query: 114 MDHPVIHASWNDAKAYCKWRRARLPTEIEWEAACRGGHQDIKYPWGNKLFPERQYKANIW 173
           M+HPV+H SWNDA A+CKW   RLPTE E+E A +GG  D  YPWGN+L    ++ AN+W
Sbjct: 179 MNHPVLHISWNDAVAFCKWSGKRLPTEAEFEYALKGGSDDTLYPWGNELLVNGKHMANLW 238

Query: 174 QGTFPHHNSAKDNFVGTNPVELFPQNDFGLHNMAGNVWEWTEDAW 218
           QG FP  N+A+D + GT PV  FPQN +GL+N+ GN WEWT D W
Sbjct: 239 QGRFPVENTAEDGYEGTCPVTAFPQNGYGLYNIIGNAWEWTSDWW 283


>SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)
          Length = 611

 Score =  127 bits (306), Expect = 9e-30
 Identities = 72/173 (41%), Positives = 98/173 (56%), Gaps = 20/173 (11%)

Query: 2   MVLVPGGEYQYGTDDIVIENDNEGPKRIVKVKSFFLDKYEVSNQDFKHFTRVTNYKTEAD 61
           MV + GG ++ GT+      D E P R V+VK+F +D+Y ++N+ F+ F R   +KTEA+
Sbjct: 1   MVKLSGGIFRMGTNS-EDGKDGENPARDVRVKAFAIDRYPITNELFRAFVRSKKFKTEAE 59

Query: 62  IFGDSFVFALFLNNTFKEKIKDFRVAQATWWYKVFGANWNHPFGPDSSITDVMDHPVIHA 121
            FG SF F  F+    + K     V Q+             P GP ++I D +++PV+H 
Sbjct: 60  KFGWSFAFHTFVPENVRSK-----VTQSV-----------QPGGPGTTIKDKLNYPVVHI 103

Query: 122 SWNDAKAYCKWRRARLPTEIEWEAACRGGHQDIKYPWGNKLFPERQYKANIWQ 174
           S+NDA AYC W   RL TE EWE A RGG Q   YPWG K F E+  + NIWQ
Sbjct: 104 SYNDATAYCNWAGKRLATEAEWEFAARGGLQGQVYPWGKK-FEEK--RMNIWQ 153


>SB_7016| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 54/200 (27%), Positives = 90/200 (45%), Gaps = 32/200 (16%)

Query: 22  DNEGPKRIVKVKSFFLDKYEVSNQDFKHFTRVTNYKTEADIFGDSFVFALFLNNTFKEKI 81
           DNE  + I +V  F   KY ++N +F  F R   Y+ ++ ++      A  +N+  K  I
Sbjct: 67  DNEYGECIARVPEFEATKYMITNGEFLEFVRTGGYENKS-LWSKE---ASDVNSNEKPLI 122

Query: 82  KDFRVAQATWWYKVFGANWNHPFGPDSSITDVMDHPV---IHASWNDAKAYCKWR--RAR 136
               +   T +      ++        ++ DV++ P+      ++++AKAYC WR  + R
Sbjct: 123 ----IQNGTHYGSASSFSYR-------AMYDVLELPLDWPAEVNYHEAKAYCAWRGPQYR 171

Query: 137 LPTEIEWEAACRGGHQDIKYPWGNKLFPERQYKANIWQGTFPHHNSAKDNFVGTNPVELF 196
           LPTE E  A  RG  + +     +    + + +ANI              F  ++ V LF
Sbjct: 172 LPTEAEHHAM-RGPQKPVSIGVKSDTIFQDKIEANI-----------NMKFGSSSAVNLF 219

Query: 197 PQNDFGLHNMAGNVWEWTED 216
           P N  G H++ GN W W ED
Sbjct: 220 PANKAGFHDVFGNAWSWAED 239


>SB_33242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 74  NNTFKEKIKDF-RVAQATWWYKVFGANWNHPFGP 106
           N T+K K K + R+ Q+ W YK F   W  P GP
Sbjct: 8   NPTWKTKRKPYIRITQSVWQYKAFTEGWKEPEGP 41


>SB_1353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 74  NNTFKEKIKDF-RVAQATWWYKVFGANWNHPFGP 106
           N T+K K K + R+ Q+ W YK F   W  P GP
Sbjct: 4   NPTWKTKRKPYIRITQSVWQYKAFTEGWKEPEGP 37


>SB_55507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 74  NNTFKEKIKDF-RVAQATWWYKVFGANWNHPFGP 106
           N T+K K K + R+ Q+ W YK F   W  P GP
Sbjct: 4   NPTWKTKRKPYIRITQSVWQYKAFTEGWKEPEGP 37


>SB_42662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1054

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 9   EYQYGTDDIVIENDNEGPKRIVKVKSFFLDKYEVSNQDFKHFTRVTNYKTEADIFGDSF 67
           E+ +G + ++I+NDN  P     + +     YE+   D KH   +  + ++A +   +F
Sbjct: 641 EFGFGFNKLIIDNDNRNPDIPTMIINERDTYYELKELDIKHHALLHIHGSDARLVVHNF 699


>SB_52950| Best HMM Match : Neuralized (HMM E-Value=5)
          Length = 139

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/59 (23%), Positives = 29/59 (49%)

Query: 9  EYQYGTDDIVIENDNEGPKRIVKVKSFFLDKYEVSNQDFKHFTRVTNYKTEADIFGDSF 67
          E+ +G + ++I+NDN  P     + +     YE+   D KH   +  + ++A +   +F
Sbjct: 22 EFGFGFNKLIIDNDNRNPDIPTMIINERDTYYELKELDIKHHALLHIHGSDARLVVHNF 80


>SB_27065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 74  NNTFKEKIKDF-RVAQATWWYKVFGANWNHPFGP 106
           N T+K K K + R+ Q+ W +K F      P GP
Sbjct: 4   NPTWKTKRKPYIRITQSVWQHKAFTEGCKEPEGP 37


>SB_1298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1668

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 29  IVKVKSFFLDKYEVSNQDFKHFTRVTNYKTEADIFGDSFVFALFLNNTFKEKIKD 83
           +VK++  F  K E+S +  + F + TN  ++ D+  D+      L   +KE +K+
Sbjct: 239 LVKLRETFNTKGEISERKEESFNKKTNSSSQTDLSIDTPPDKRELKLEYKESVKE 293


>SB_55076| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 74  NNTFKEKIKDF-RVAQATWWYKVFGANWNHPFGP 106
           N T+K K K + R+ Q+ W +K F      P GP
Sbjct: 8   NPTWKTKRKPYIRITQSVWQHKAFTEGCKEPEGP 41


>SB_30579| Best HMM Match : RVT_1 (HMM E-Value=0.00034)
          Length = 654

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)

Query: 33  KSFFLDKYEVSNQDFKHFTRVTNYKTEADIFGDSFVF 69
           KSFFLD++ VS+   + FT          +FGD + +
Sbjct: 397 KSFFLDEHWVSSPKLRLFTDAAGSLGYGAVFGDEWCY 433


>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 120 HASWNDAKAYCKWRRARLPT 139
           H  W   + YC WRRA   T
Sbjct: 24  HTHWTSDRGYCDWRRALTAT 43


>SB_54490| Best HMM Match : AMP-binding (HMM E-Value=4.2039e-45)
          Length = 565

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 121 ASWNDAKAYCKWRRARLPTEIEWEAACRG 149
           A+W D      WR  R P     E  CRG
Sbjct: 84  ANWVDGGTCASWRHQRFPNYASEEIKCRG 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,522,789
Number of Sequences: 59808
Number of extensions: 419832
Number of successful extensions: 872
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 17
length of query: 235
length of database: 16,821,457
effective HSP length: 80
effective length of query: 155
effective length of database: 12,036,817
effective search space: 1865706635
effective search space used: 1865706635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)