Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000290-TA|BGIBMGA000290-PA|IPR005532|Protein of unknown
function DUF323
         (235 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37630.1 68415.m04616 myb family transcription factor (MYB91)...    31   0.89 
At1g48670.1 68414.m05447 auxin-responsive GH3 family protein sim...    28   4.8  
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ...    28   6.3  

>At2g37630.1 68415.m04616 myb family transcription factor (MYB91)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain
          Length = 367

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 120 HASWNDAKAYCKWRRARLPTEIEWEAACR 148
           H +W D K    WR  RL  ++E E  CR
Sbjct: 265 HRAWADHKKEAAWRLRRLELQLESEKTCR 293


>At1g48670.1 68414.m05447 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 525

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 64  GDSFVFAL-----FLNNTFKEKIKDFRVAQATWWYK-VFGANWNHPF--GPDSSITDVMD 115
           G +F F L     FL   +KE   + R    + W   + G N       GPDS + DV++
Sbjct: 161 GAAFAFVLVRAIDFLEKHWKELCSNIRSGHVSEWITDLEGRNAVSTILRGPDSILADVIE 220

Query: 116 HPVIHASW 123
               H SW
Sbjct: 221 QECSHKSW 228


>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
           family protein contains Pfam domain PF04153: NOT2 / NOT3
           / NOT5 family
          Length = 843

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 18  VIENDNEGPKRIVKVKSFFLDKYEVSNQDFKHFTRV 53
           +++ND   P+++  VK F  D  E +  DF  F+ V
Sbjct: 191 LLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDV 226


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,832,137
Number of Sequences: 28952
Number of extensions: 307784
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 12,070,560
effective HSP length: 79
effective length of query: 156
effective length of database: 9,783,352
effective search space: 1526202912
effective search space used: 1526202912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)