GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000290-TA|BGIBMGA000290-PA|IPR005532|Protein of unknown
function DUF323
         (235 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1761 - 29298071-29298337                                         33   0.20 
09_04_0701 + 19583386-19583554,19584290-19584441,19585123-195851...    33   0.26 
11_04_0027 - 12453488-12453547,12454972-12455673,12455907-124559...    30   1.4  
08_02_0992 + 23380855-23381195,23382464-23382506,23383306-233833...    29   3.3  
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417...    29   4.3  
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144...    28   5.7  
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551...    27   9.9  

>07_03_1761 - 29298071-29298337
          Length = 88

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 8  GEYQYGTDDIVIENDNEGPKRIVKVKSFFLDKYEVSNQDFKHFTRVTNYKTEA 60
          GEYQYG  + V+     G +R+  V  +    + +S+ + K   RV  YK+ A
Sbjct: 10 GEYQYGNGNAVVPYGGGGERRMKAVCRWVPGAWWLSDPEMKRRRRVAGYKSYA 62


>09_04_0701 +
           19583386-19583554,19584290-19584441,19585123-19585181,
           19585319-19585344,19585407-19585758,19586184-19586667
          Length = 413

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 151 HQDIKYPWGNKLFPERQYKANIWQGTFPHHNSAKDNFVGTNPVEL 195
           H +  Y W ++ F  +  + + W    P HN + DNF G +  EL
Sbjct: 353 HANQSYSWSSETFWPQTGEPHWWSPMAPVHNRSYDNFSGRSATEL 397


>11_04_0027 -
           12453488-12453547,12454972-12455673,12455907-12455940,
           12456005-12456125,12456509-12457139
          Length = 515

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/25 (48%), Positives = 13/25 (52%)

Query: 201 FGLHNMAGNVWEWTEDAWTEDDPKE 225
           F L    G  W+W  DAWT D  KE
Sbjct: 112 FFLWRNGGPNWQWEFDAWTRDQEKE 136


>08_02_0992 +
           23380855-23381195,23382464-23382506,23383306-23383371,
           23384228-23384428,23384450-23384707,23384798-23385013,
           23385148-23385321,23386151-23386312,23386594-23386635
          Length = 500

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 168 YKANIWQGTFPHHNSAKDNFVGTNPVELFPQ 198
           Y A IW+  FP H S+        P ELFPQ
Sbjct: 212 YVAKIWRNHFPQHYSSISE--SNLPAELFPQ 240


>03_05_0520 +
           25139314-25139364,25139580-25139711,25141594-25141731,
           25143191-25143241,25143662-25143751,25143854-25144000,
           25144108-25144218,25144307-25144375,25144777-25145517,
           25145840-25146004,25146376-25146442,25146580-25146704,
           25148714-25148983,25149065-25149199,25149316-25149497,
           25149669-25149744
          Length = 849

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 18  VIENDNEGPKRIVKVKSFFLDKYEVSNQDFKHFTRV 53
           +++ND   P+++  VK F  D  E + +DF  F+ V
Sbjct: 177 LLDNDELSPEQVNDVKDFLDDYVERNQEDFDEFSDV 212


>05_01_0201 -
           1441063-1443836,1444658-1445758,1446367-1447179,
           1447386-1447440
          Length = 1580

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 29  IVKVKSFFLDKYEVSNQDFKHFTRVTNYKTEADIFGDSFVFALFLNNTFKE--KIKDFRV 86
           I + K  F++K     +DF   +    +KT AD     F +    +++F+E  K+ D R 
Sbjct: 729 IQEEKEIFMEKLATFGKDFSKISSFLQHKTTADCI--EFYYKHHKSDSFREVKKLLDLRQ 786

Query: 87  AQA---TWWYKVFGANWN 101
            Q     +   V G  WN
Sbjct: 787 QQQPANNYLGAVSGKKWN 804


>09_04_0517 -
           18253325-18253870,18254209-18254781,18254888-18255100,
           18255554-18255685,18255804-18255944,18256104-18256325
          Length = 608

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 35  FFLDKYEVSNQDFKHFTRVTNYKTEADIFGDSF 67
           FFLD+       F  + ++ N  T+ DI+G+SF
Sbjct: 199 FFLDEEMGQKIGFVQYPQIFNNMTQNDIYGNSF 231


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,298,709
Number of Sequences: 37544
Number of extensions: 364160
Number of successful extensions: 639
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 634
Number of HSP's gapped (non-prelim): 7
length of query: 235
length of database: 14,793,348
effective HSP length: 80
effective length of query: 155
effective length of database: 11,789,828
effective search space: 1827423340
effective search space used: 1827423340
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)