GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000290-TA|BGIBMGA000290-PA|IPR005532|Protein of unknown
function DUF323
         (235 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    27   0.63 
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    26   0.84 
AY752898-1|AAV30072.1|   72|Anopheles gambiae peroxidase 5A prot...    23   7.8  

>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 26.6 bits (56), Expect = 0.63
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 11/60 (18%)

Query: 141 IEWEAACRGGHQDIKYPWGNKLFPERQYKANIWQGTFPHHNSAKDNFVGTNPVELFPQND 200
           + W ++  GG +D++ P      P R +K ++       +NSA + F GT P  +  +N+
Sbjct: 68  VRWNSSEYGGVRDLRIP------PHRLWKPDVLM-----YNSADEGFDGTYPTNVVVRNN 116


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 0.84
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 141 IEWEAACRGGHQDIKYPWGNKLFPERQYKANIWQGTFPHHNSAKDNFVGTNPVELFPQND 200
           + W  +  GG +D++ P      P R     IW+     +NSA + F GT P  +  +N+
Sbjct: 100 LRWNTSEYGGVRDLRIP------PHR-----IWKPDVLMYNSADEGFDGTYPTNVVVRNN 148


>AY752898-1|AAV30072.1|   72|Anopheles gambiae peroxidase 5A
           protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 118 VIHASWNDAKAYCKWRRARL 137
           ++H  WND K + + RR  +
Sbjct: 52  IVHPLWNDEKVFQEARRINI 71


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.136    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,483
Number of Sequences: 2123
Number of extensions: 13359
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 516,269
effective HSP length: 62
effective length of query: 173
effective length of database: 384,643
effective search space: 66543239
effective search space used: 66543239
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)