GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000290-TA|BGIBMGA000290-PA|IPR005532|Protein of unknown
function DUF323
         (235 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.35 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   7.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 141 IEWEAACRGGHQDIKYPWGNKLFPERQYKANIWQGTFPHHNSAKDNFVGTNPVELFPQND 200
           + W  +  GG +D++ P      P R +K ++       +NSA + F GT P  +  +N+
Sbjct: 85  MRWNVSDYGGVRDLRIP------PHRLWKPDVLM-----YNSADEGFDGTYPTNVVVKNN 133


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 39  KYEVSNQDFKHFTRVTNYKTEADI 62
           K+E  N D+ H T    + +  DI
Sbjct: 225 KHESDNSDYSHTTDENRHSSTLDI 248


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 16  DIVIENDNEGPKRIVKVKSFFLDKYEVSNQD 46
           D++ + + E  + I +  S +LD  EVS ++
Sbjct: 156 DVLFKQNKEEEQTINRKNSDYLDNQEVSMEN 186


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,543
Number of Sequences: 429
Number of extensions: 3592
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 235
length of database: 140,377
effective HSP length: 56
effective length of query: 179
effective length of database: 116,353
effective search space: 20827187
effective search space used: 20827187
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)