Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
         (300 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05270.1 68414.m00533 TraB family protein contains Pfam domai...   103   1e-22
At5g52030.2 68418.m06456 TraB protein-related                          69   4e-12
At5g52030.1 68418.m06457 TraB protein-related                          59   4e-09
At2g32340.1 68415.m03953 TraB family protein contains Pfam domai...    36   0.025
At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containi...    32   0.41 
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    32   0.54 
At3g28750.1 68416.m03589 expressed protein                             31   1.2  
At5g47380.1 68418.m05839 expressed protein contains Pfam profile...    30   2.2  
At4g20510.1 68417.m02990 expressed protein                             30   2.2  
At3g52400.1 68416.m05763 syntaxin, putative (SYP122) similar to ...    29   2.9  
At3g04960.1 68416.m00538 expressed protein low similarity to SP|...    29   2.9  
At5g13200.1 68418.m01512 GRAM domain-containing protein / ABA-re...    28   6.6  
At2g01270.1 68415.m00040 thioredoxin family protein low similari...    28   8.8  

>At1g05270.1 68414.m00533 TraB family protein contains Pfam domain
           PF01963: TraB family
          Length = 371

 Score =  103 bits (248), Expect = 1e-22
 Identities = 84/251 (33%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 41  KSDVSQHLPKSATLLQNDKQAT-----VVLLGTVHFSKQSIEDVSEIVKILNPNGILVEL 95
           K ++ + L KS  +L  +  A      V L+GT H SKQS  +V  I+ IL P  + VEL
Sbjct: 84  KVELPEELAKSVVILTCESTADGGSCDVYLVGTAHVSKQSCLEVEAIISILKPEVVFVEL 143

Query: 96  CRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAP 155
           C  R+S            +   +S K KQ         G+L+   L   A IA  L V P
Sbjct: 144 CSSRLSVLKPQTLKIPTMSDMIESWKQKQN------TFGILYGWFL---AKIASHLEVFP 194

Query: 156 GGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKN 215
           G EFR AY E  K  G K+ LGDRP+QIT+ R +  + ++   + LY I           
Sbjct: 195 GAEFRVAYEEAIKYGG-KVILGDRPVQITLKRTWAKMPLWHKVKFLYSILFQAVFLPGAE 253

Query: 216 NLEK-YKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGV 274
            LEK  KD + V      I +    F  +    V ERD+ +A SL     + ++  V+ V
Sbjct: 254 ELEKMLKDMDNVDMVTLVIQEMSKEFPTLMDTIVHERDQYMASSLLRV--ASDHSSVVAV 311

Query: 275 VGMGHVDGIIK 285
           +G GH++GI K
Sbjct: 312 IGKGHINGIKK 322


>At5g52030.2 68418.m06456 TraB protein-related
          Length = 402

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 69/245 (28%), Positives = 108/245 (44%), Gaps = 29/245 (11%)

Query: 65  LLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQR-VSXXXXXXXXXXXXAKNFDSKKLK 123
           L+GT H S +S   V  +V+ + P+ + VELCR R V               +    ++ 
Sbjct: 96  LVGTSHISPESASIVERVVRTVKPDNVAVELCRSRKVQFFIQTKFGAGIMYTSSVGGEVD 155

Query: 124 QAVKGQNLV---TGMLHA----------------MLLKTYADIAKELGVAP-GGEFRRAY 163
           Q +K   L    TG L A                +LL  ++     +   P G EFR A 
Sbjct: 156 QNLKSGELSLTGTGFLGAVGRSLDLGGQTALALRLLLAVFSSKLSSVADRPFGDEFRAAR 215

Query: 164 HEMQKIPGCKLYLGDRPIQITIARAFQSL---SVYELGQVLYHISTSNPKPLDKNNLEKY 220
              +++ G +L LGDRPI+IT+ RA+ SL     + L   +  + TS+         E+ 
Sbjct: 216 KASEEV-GAQLVLGDRPIEITLQRAWNSLKWGEKFNLVMAVTRVITSSSGISAAELKEQE 274

Query: 221 KDKEFVQSQ-FEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVGMGH 279
            D+     Q +E +    PA   +    + ERD  LA+SL+          V+GV+G GH
Sbjct: 275 TDENSGSLQLYERLSFSYPA---LLMPLIHERDTYLAWSLKRSKAVNGCKTVVGVIGKGH 331

Query: 280 VDGII 284
           ++G+I
Sbjct: 332 MNGVI 336


>At5g52030.1 68418.m06457 TraB protein-related
          Length = 258

 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 133 TGMLHAMLLKTYADIAKELGVAP-GGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQS 191
           T +   +LL  ++     +   P G EFR A    +++ G +L LGDRPI+IT+ RA+ S
Sbjct: 40  TALALRLLLAVFSSKLSSVADRPFGDEFRAARKASEEV-GAQLVLGDRPIEITLQRAWNS 98

Query: 192 L---SVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQ-FEEIIKDVPAFKKIFHVF 247
           L     + L   +  + TS+         E+  D+     Q +E +    PA   +    
Sbjct: 99  LKWGEKFNLVMAVTRVITSSSGISAAELKEQETDENSGSLQLYERLSFSYPA---LLMPL 155

Query: 248 VDERDKCLAYSLQECVRSVENPRVLGVVGMGHVDGII 284
           + ERD  LA+SL+          V+GV+G GH++G+I
Sbjct: 156 IHERDTYLAWSLKRSKAVNGCKTVVGVIGKGHMNGVI 192


>At2g32340.1 68415.m03953 TraB family protein contains Pfam domain
           PF01963: TraB family
          Length = 272

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 148 AKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQI 183
           AK+L V PG EFR  + E  K  G +++LGDR +Q+
Sbjct: 128 AKKLEVFPGAEFRVGFEEANKYGG-RVFLGDRSVQL 162



 Score = 35.5 bits (78), Expect = 0.044
 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 240 FKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVGMGHVDGIIKYYGK 289
           F  +    V ERDK +AY L       E+  V+ VVG GH+ GI K + +
Sbjct: 182 FPTLMETLVHERDKYMAYQLLRIAS--EHSSVVAVVGRGHLQGIKKNWNQ 229


>At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 565

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 4/96 (4%)

Query: 3   CPICVIARQLLFKNIESIVTAKPNTVQTYYSQKVL----LRKKSDVSQHLPKSATLLQND 58
           C + ++ R       E+I+ + P        + +L    + K ++++Q + K    +  +
Sbjct: 335 CVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPN 394

Query: 59  KQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVE 94
             A  VLL  VH S +   DVSE+ K +    +  E
Sbjct: 395 DSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKE 430


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile TBP
            (TATA-binding protein) -interacting protein 120 (TIP120);
            contains TIGRFAM profile TIGR01612:  reticulocyte binding
            protein
          Length = 1866

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 174  LYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEI 233
            L+ GDR  QI  A  F+S S      +  H S   P       + +++D++ + S FEE+
Sbjct: 1465 LHSGDRSSQIACASLFKSFSSTAADIMSSHQSAIVPAIF----ISRFEDEKQISSLFEEV 1520

Query: 234  IKDVPAFKKI-FHVFVDE 250
             +D+ + +++   +F+ E
Sbjct: 1521 WEDITSGERVTLQLFLQE 1538


>At3g28750.1 68416.m03589 expressed protein 
          Length = 333

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 263 VRSVENPRVLGVVGMGHVDGIIKYYGK 289
           VR+    +V G  G G+ DGI+KY+GK
Sbjct: 278 VRAQVEAKVGGETGSGYYDGIMKYFGK 304


>At5g47380.1 68418.m05839 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 618

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 192 LSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVP-AFKKIFHVFVDE 250
           L  Y    V   +  S  + L  N + K + K  +    E   K+   +F  +    +D 
Sbjct: 488 LKAYTASNVKEELDASKREFLGANVVVKMQKKVLLPKIIERFTKEASLSFDDLMRWLIDN 547

Query: 251 RDKCLAYSLQECVRSVEN 268
            D+ L  S+Q+CV+   N
Sbjct: 548 ADEKLGESIQKCVQGKPN 565


>At4g20510.1 68417.m02990 expressed protein
          Length = 413

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 18  ESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIE 77
           +S+   +P        + V++   +  S+ +    T+L  DK  TV  LG    S++S E
Sbjct: 261 QSVQVVEPEVQSVSGDRSVVVYAAAPASEEVNAGLTILDLDKDETVAELG---ISRRSRE 317

Query: 78  DVSEIVKILNPNGILVELCRQRVS 101
               ++ + +    L  +CR R++
Sbjct: 318 GSQPVINLDDSGPTLKVICRWRLT 341


>At3g52400.1 68416.m05763 syntaxin, putative (SYP122) similar to
           SP|Q9ZSD4 Syntaxin 121 (AtSYP121) (Syntaxin-related
           protein At-Syr1) {Arabidopsis thaliana}
          Length = 341

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 19/70 (27%), Positives = 34/70 (48%)

Query: 13  LFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFS 72
           L K +++ VTA   T +        L + ++V++ LP+S     +D+Q T V+ G     
Sbjct: 86  LKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKL 145

Query: 73  KQSIEDVSEI 82
           K  +E  S +
Sbjct: 146 KDEMEKFSRV 155


>At3g04960.1 68416.m00538 expressed protein low similarity to
           SP|P32380 NUF1 protein (Spindle poly body spacer protein
           SPC110) {Saccharomyces cerevisiae}
          Length = 556

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 256 AYSLQECVRSVENPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLLL 300
           +Y   E V   ++ R +GV  +G V+G    Y +  Q  +V +++
Sbjct: 454 SYDFVEVVTEFDSDRGIGVAYLGRVEGFTSVYERAAQNGLVEIMI 498


>At5g13200.1 68418.m01512 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 272

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 175 YLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKY 220
           +  DRP+  T     +S S Y +   L +++T NP  + +   EKY
Sbjct: 185 FCSDRPLYFTAPSGQESWSYYRVVVPLANVATVNPVVVKETPPEKY 230


>At2g01270.1 68415.m00040 thioredoxin family protein low similarity
           to quiescin [Homo sapiens] GI:13257405; contains Pfam
           profiles PF00085: Thioredoxin, PF04777: Erv1 / Alr
           family
          Length = 495

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 198 GQVLYHISTSNPKPLDKNNLEKYKDK--EFVQSQFEEIIKDVPAFKKIFHVFVDERDKCL 255
           G V+   S+S    L    +   KDK  E   + F+ ++KD PA   +   F      C 
Sbjct: 11  GLVIAASSSSPGSRLILREISDQKDKAVELNTTNFDSVLKDTPAKYAVVEFFAHWCPACR 70

Query: 256 AYS--LQECVRSVENPRVL--GVVGMGHVDGIIKYYGKM 290
            Y    ++  R    P  +  G+V M  VD  +K   K+
Sbjct: 71  NYKPHYEKVARLFNGPDAIHPGIVLMTRVDCAMKTNTKL 109


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,546,048
Number of Sequences: 28952
Number of extensions: 257022
Number of successful extensions: 677
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 17
length of query: 300
length of database: 12,070,560
effective HSP length: 81
effective length of query: 219
effective length of database: 9,725,448
effective search space: 2129873112
effective search space used: 2129873112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)