GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
         (300 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   6.4  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    22   6.4  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   8.5  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   8.5  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   8.5  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 22  TAKPNTVQTYYSQKVLLRKKSDVS 45
           ++ P + + YY+QK L    +D S
Sbjct: 101 SSTPESPEHYYNQKTLQANNNDAS 124


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 5   ICVIARQLLFKNIESIVTAKPNTVQTYYSQKVLLRK 40
           IC  A QLLF N++ + +    T      Q +LL +
Sbjct: 199 ICESAAQLLFMNVQWVRSIPAFTCLPLSDQLLLLEE 234


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 167 QKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKP 211
           + +PGC+ Y GD  ++ +I ++     +   G    H   +  KP
Sbjct: 215 EDVPGCEDYYGDLDLK-SIRKSELLAGLQSSGSSRSHQPATKSKP 258


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 181 IQITIARAFQSLSVYELGQVLYHISTSNPKPLD 213
           IQ  +AR   + S YE  +   + S  NP+P D
Sbjct: 110 IQTQVARPPPARSPYEWIKKTSYQSQPNPEPAD 142


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 181 IQITIARAFQSLSVYELGQVLYHISTSNPKPLD 213
           IQ  +AR   + S YE  +   + S  NP+P D
Sbjct: 110 IQTQVARPPPARSPYEWIKKTSYQSQPNPEPAD 142


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.137    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,383
Number of Sequences: 317
Number of extensions: 2599
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 300
length of database: 114,650
effective HSP length: 56
effective length of query: 244
effective length of database: 96,898
effective search space: 23643112
effective search space used: 23643112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)