Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
(300 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 29 0.81
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 28 1.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 27 2.5
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 27 2.5
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 3.3
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 3.3
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|... 27 4.3
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 4.3
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 7.6
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 29.1 bits (62), Expect = 0.81
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 214 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVE----NP 269
++N + K F + Q E +KD + FHVF ++ LAY S+ N
Sbjct: 292 RSNHSGIESKTFKKYQVIEALKDPVTWLFTFHVFCNQLSNNLAYQQNLLFTSLNVSDLNS 351
Query: 270 RVLGVVGMGH--VDGIIKYY 287
++GV G+ V II Y
Sbjct: 352 TLVGVASAGYNCVSAIIATY 371
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 40 KKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKI 85
K+ S+ L S +L ND+ A + + GT+ S + ++DVS ++++
Sbjct: 76 KRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRL 121
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 4 PICVIARQLLFKNIESIVTAKPNTVQT 30
P V+ +++FK ES++ KPN VQ+
Sbjct: 771 PSIVLTSKVVFKIAESLILLKPNEVQS 797
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 128 GQNLVTGMLHAMLLKTYADIAKELGVAPG 156
GQ + GMLHA L +YA+ + + PG
Sbjct: 467 GQPQIPGMLHASLSNSYAEPSTQNSFIPG 495
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 3.3
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 32 YSQKVL-LRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPN 89
Y++K+ L + +S PKS + + D + V + G +F+ ++E+V EI+ N N
Sbjct: 184 YNEKIRDLLVQDPLSMEKPKSLNICE-DAEQNVSVPGLSYFTPTNLEEVMEIIIRGNSN 241
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 122 LKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYH----EMQKIPGCKLYLG 177
L + +K N++ H ++K Y+D L V+P + Y E+Q + G +Y+
Sbjct: 1158 LHRDIKPANILLD--HRGMIK-YSDFGSALYVSPPTDPEVRYEDIQPELQHLAGTPMYMA 1214
Query: 178 DRPIQITIARAFQSLSVYELGQVLYHISTSN 208
I T F ++ ++ LG V+ + T +
Sbjct: 1215 PEIILGTKKGDFGAMDIWSLGCVILEMMTGS 1245
>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 492
Score = 26.6 bits (56), Expect = 4.3
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 9 ARQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGT 68
+R + K+I++ A + + YYS K+ K + S + L+ ++ L+G
Sbjct: 204 SRSAIQKDIKAKERAVEHIAKKYYSSKITKEKVRWCLYSIADSNSYLRYNRDPIAKLIGL 263
Query: 69 V--HFSKQSIED 78
V +FS +++D
Sbjct: 264 VEAYFSPDTVDD 275
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 208 NPKPLDKNNLEKYKDKEFVQSQF 230
NPK L K +KDKE+ S +
Sbjct: 648 NPKELSKKKTTDFKDKEYYMSHY 670
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 50 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
K+ TL QN+ + + +GT+ FS +S++ V ++
Sbjct: 409 KTGTLTQNEMEMKKLHVGTMGFSAESMDVVQACIQ 443
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,301,545
Number of Sequences: 5004
Number of extensions: 51950
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 177
Number of HSP's gapped (non-prelim): 11
length of query: 300
length of database: 2,362,478
effective HSP length: 72
effective length of query: 228
effective length of database: 2,002,190
effective search space: 456499320
effective search space used: 456499320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)
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