Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
(300 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0367 - 24444268-24444393,24444524-24444635,24444721-244448... 64 2e-10
08_02_1466 + 27322340-27322610,27322907-27322995,27323276-273233... 43 3e-04
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 33 0.37
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468... 31 0.85
03_06_0451 + 34025048-34027099,34028210-34028242 31 1.1
03_06_0426 + 33855701-33856135 29 3.4
12_01_0447 - 3530766-3530942,3531058-3531147,3531396-3531478,353... 28 8.0
11_01_0443 - 3399226-3399242,3399551-3399731,3399847-3399936,340... 28 8.0
03_06_0191 - 32228642-32228949,32229028-32230567 28 8.0
>05_05_0367 -
24444268-24444393,24444524-24444635,24444721-24444821,
24445727-24445831,24445929-24446015,24446630-24446689,
24446834-24446881,24447571-24447816
Length = 294
Score = 63.7 bits (148), Expect = 2e-10
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 63 VVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSKKL 122
V ++GT H S++S + V ++ L P + +ELC RV+ + D K
Sbjct: 72 VYVVGTAHVSQESCDQVKAVIDYLKPQAVFLELCASRVAILTPQNLQVPTMNEMIDMWKK 131
Query: 123 KQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQ 182
K+ N G+L++ L A +A +L V PG EFR A+ E G K+ LGDRP+Q
Sbjct: 132 KK----MN-TFGILYSWFL---AKVASQLDVLPGAEFRVAFEEAMSYGG-KVILGDRPVQ 182
Query: 183 I 183
+
Sbjct: 183 L 183
Score = 31.9 bits (69), Expect = 0.65
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 221 KDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVGMGHV 280
KD E V I + AF + + ERD ++ L + + E+ V+ VVG GHV
Sbjct: 184 KDMEDVDMLTLVIQEMSKAFPTLMETLLHERDMYMSSKLLKVAK--EHSSVVAVVGKGHV 241
Query: 281 DGIIK 285
GI K
Sbjct: 242 SGIKK 246
>08_02_1466 +
27322340-27322610,27322907-27322995,27323276-27323368,
27323515-27323613,27323763-27324017
Length = 268
Score = 43.2 bits (97), Expect = 3e-04
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 63 VVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQR 99
V +LGT H S++S+ DV +++ + P+ ++VELCR R
Sbjct: 51 VWILGTSHLSEESVADVERVLRAVRPDNVVVELCRSR 87
Score = 40.3 bits (90), Expect = 0.002
Identities = 26/107 (24%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 178 DRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDV 237
+RP + RA++SLS E +++ + D + +D++ S +E K
Sbjct: 114 NRPFGEELERAWKSLSWDEKTKLVVSLFRGITSTTDTS-----QDEKAAGSPYELYEKLS 168
Query: 238 PAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVGMGHVDGII 284
++ + + ERD LA+SL+ ++ V+G++G GH++G++
Sbjct: 169 ISYPSLLQPLIHERDMFLAWSLKRSKAVNKSKTVVGIIGKGHMNGVV 215
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 32.7 bits (71), Expect = 0.37
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 10 RQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATL--LQNDKQATVVLLG 67
R FK + K +T+ Y+++ +L KSD S + A ++ND Q T V
Sbjct: 590 RSTAFKPLTESSGRKQSTITNYFARTMLAASKSDTSDKVTVDANQNNVRNDDQFTEV--- 646
Query: 68 TVHFSKQSIEDVSEIV 83
V KQS+ + +IV
Sbjct: 647 -VESEKQSVSQLLQIV 661
>07_01_0627 +
4685077-4685155,4685978-4686336,4686761-4686862,
4687528-4687598,4687871-4687989,4688327-4688422,
4688527-4688636,4688734-4688814,4689124-4689224,
4689663-4689771,4689971-4690076,4690140-4690225,
4690324-4690449,4690816-4690902
Length = 543
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 26 NTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQS--IEDVSEIV 83
N + T YS K+L + + V + K + + ++ +H+SK S ++ ++ I
Sbjct: 464 NILSTKYSDKMLAQIEPFVYEWTSKQRGSISAEHGLGLMKAEKIHYSKSSEAVQLMASIK 523
Query: 84 KILNPNGIL 92
K+L+PN IL
Sbjct: 524 KLLDPNSIL 532
>03_06_0451 + 34025048-34027099,34028210-34028242
Length = 694
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 3 CPICVIARQLLFKNIESIVTAKPNTVQTYYSQKVL----LRKKSDVSQHLPKSATLLQND 58
C + ++ R E+++ + P T + +L +K D+++ + K L
Sbjct: 482 CVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPH 541
Query: 59 KQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVE 94
A+ VLL + + + DVSE+ K + N + E
Sbjct: 542 DSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKE 577
>03_06_0426 + 33855701-33856135
Length = 144
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 137 HAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARA 188
H + ++ A A GV G E R +MQ++P C++ + + + + RA
Sbjct: 46 HGLFARSLALFADLHGVRGGEELDRKARKMQRLPPCRILSQELDVLVELDRA 97
>12_01_0447 -
3530766-3530942,3531058-3531147,3531396-3531478,
3531571-3531886,3531979-3532040,3532139-3532244,
3532346-3532412,3532495-3532608,3532706-3532784,
3533043-3533213,3534223-3534355,3534922-3535081,
3535179-3535330
Length = 569
Score = 28.3 bits (60), Expect = 8.0
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 4 PICVIARQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQ 56
P+ V +++ + S+V A NT+Q ++ K LL + V+Q+L TL++
Sbjct: 241 PVYVATQKMREFRVNSVVVATGNTLQGIFTSKDLLMRV--VAQNLSPELTLVE 291
>11_01_0443 -
3399226-3399242,3399551-3399731,3399847-3399936,
3400377-3400459,3400540-3400667,3400747-3401002,
3401094-3401199,3401300-3401366,3401467-3401580,
3401811-3401889,3402189-3402359,3403135-3403267,
3403874-3404033,3404119-3404261
Length = 575
Score = 28.3 bits (60), Expect = 8.0
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 4 PICVIARQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSAT 53
P+CV AR++ + S+V N++Q ++ K +L + V+Q+L T
Sbjct: 238 PVCVAARKMHELRVNSVVITAGNSLQGIFTSKDVLMRV--VTQNLSPELT 285
>03_06_0191 - 32228642-32228949,32229028-32230567
Length = 615
Score = 28.3 bits (60), Expect = 8.0
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 5 ICVIARQLLFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVS------QHLPKSATLLQND 58
I + +Q FK S+++ P+ V++ S +LL+ DV +H+ + +
Sbjct: 507 ILALCKQGNFKGALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIRSNFSSS 566
Query: 59 KQATVVLLGTVHFSKQSIEDVSEIVKILNPNGIL 92
Q + L + S++ V+ ++ LN GI+
Sbjct: 567 FQNIINELMASLSTSASLQPVTRLISYLNSQGIV 600
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,642,702
Number of Sequences: 37544
Number of extensions: 287861
Number of successful extensions: 685
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 11
length of query: 300
length of database: 14,793,348
effective HSP length: 82
effective length of query: 218
effective length of database: 11,714,740
effective search space: 2553813320
effective search space used: 2553813320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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