GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
         (300 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41)              182   2e-46
SB_47771| Best HMM Match : Annexin (HMM E-Value=0)                     29   6.1  
SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)                   28   8.1  

>SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41)
          Length = 478

 Score =  182 bits (444), Expect = 2e-46
 Identities = 97/264 (36%), Positives = 161/264 (60%), Gaps = 17/264 (6%)

Query: 48  LPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXX 107
           LP++ T L+  +   V ++GT HFSK+S EDV++ ++ + P+ +LVELC+ R+       
Sbjct: 145 LPETVTKLETPEGCVVYVIGTAHFSKESQEDVAKTIQAVQPDRVLVELCKSRIDILKYDE 204

Query: 108 XXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQ 167
                 AKN D +KLK A+K   +V G++  +LL   A I ++LG+APGGEFR AY E +
Sbjct: 205 EFLLREAKNIDMQKLKLAIKQSGVVGGIMQVLLLSMSAHITQQLGMAPGGEFRAAYREAR 264

Query: 168 KIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQ 227
           K+ GC+++LGDRPIQ+T++RA  +L+V++  ++ +H+ T+  +P+   ++E+ K K+ + 
Sbjct: 265 KL-GCQVHLGDRPIQVTLSRAMAALTVWQKVKLAWHLLTTK-EPISPEDVERCKQKDLLA 322

Query: 228 SQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV------RSVENPR------VLGVV 275
               E+  D P    ++ VFV ERD+ LA SL+           +  P+       +GVV
Sbjct: 323 EMLAEMTGDFPL---LYKVFVTERDQYLARSLRLSAVPNILSNEIGEPQGIIPSVTVGVV 379

Query: 276 GMGHVDGIIKYYGKMKQEDIVPLL 299
           G+GHV GI++ + K ++ DI  L+
Sbjct: 380 GIGHVAGIVENFHKFEEIDIQELM 403


>SB_47771| Best HMM Match : Annexin (HMM E-Value=0)
          Length = 529

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 205 STSNP---KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKK 242
           S+S P   KP D  N EK K+KE V+ + ++I K   A +K
Sbjct: 18  SSSKPDERKPSDSQNKEKDKEKEKVEEKDDDITKLQKAIEK 58


>SB_55005| Best HMM Match : DUF1458 (HMM E-Value=1.8)
          Length = 302

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 22  TAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSE 81
           T K N  ++Y + + L +    V QHLPKS       + A +V L +V       ++ +E
Sbjct: 78  TPKSNNKKSYKTPQALGKAVGKVKQHLPKS----PGKRNAVIVKLASVAGVPPDAKNTNE 133

Query: 82  IV 83
           +V
Sbjct: 134 LV 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.137    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,081,477
Number of Sequences: 59808
Number of extensions: 340758
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 3
length of query: 300
length of database: 16,821,457
effective HSP length: 82
effective length of query: 218
effective length of database: 11,917,201
effective search space: 2597949818
effective search space used: 2597949818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)