Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
(300 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ529300-1|ABF71986.1| 376|Homo sapiens TTG2 protein. 165 1e-40
AL449244-1|CAC15001.1| 376|Homo sapiens hypothetical protein pr... 165 1e-40
AL022328-5|CAI42754.1| 376|Homo sapiens protein ( Human DNA seq... 165 1e-40
BC012445-1|AAH12445.1| 330|Homo sapiens TRABD protein protein. 159 1e-38
AL022328-7|CAB63044.1| 304|Homo sapiens protein ( Human DNA seq... 159 1e-38
BC093029-1|AAH93029.1| 292|Homo sapiens TRABD protein protein. 156 1e-37
AL022328-6|CAB63043.1| 309|Homo sapiens protein ( Human DNA seq... 142 2e-33
AK024447-1|BAB15737.1| 145|Homo sapiens FLJ00037 protein protein. 36 0.13
BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-l... 33 0.92
AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-l... 33 0.92
AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent ... 33 0.92
AL590005-2|CAI14989.1| 7543|Homo sapiens dystonin protein. 31 3.7
AL512448-1|CAI16609.1| 7543|Homo sapiens dystonin protein. 31 3.7
AL512422-2|CAI14341.1| 7543|Homo sapiens dystonin protein. 31 3.7
AL137008-2|CAI20330.1| 7543|Homo sapiens dystonin protein. 31 3.7
AL096710-5|CAI22046.1| 3060|Homo sapiens dystonin protein. 31 3.7
AL096710-3|CAI22044.1| 7543|Homo sapiens dystonin protein. 31 3.7
AF400227-1|AAL62062.1| 3060|Homo sapiens bullous pemphigoid anti... 31 3.7
>DQ529300-1|ABF71986.1| 376|Homo sapiens TTG2 protein.
Length = 376
Score = 165 bits (402), Expect = 1e-40
Identities = 91/252 (36%), Positives = 145/252 (57%), Gaps = 17/252 (6%)
Query: 47 HLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXX 106
+LP++ T L + + V ++GT HFS S DV + ++ + P+ ++VELC+ RVS
Sbjct: 59 NLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMD 118
Query: 107 XXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEM 166
A+ +KL+QAV+ L++G++ +LLK A I ++LG+APGGEFR A+ E
Sbjct: 119 ESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEA 178
Query: 167 QKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFV 226
K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+ K+++E+ K K+ +
Sbjct: 179 SKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPISKDDVERCKQKDLL 237
Query: 227 QSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR-------------VLG 273
+ E+I + P + V ERD L Y L++ R +E PR V+G
Sbjct: 238 EQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVG 294
Query: 274 VVGMGHVDGIIK 285
VVGMGHV GI K
Sbjct: 295 VVGMGHVPGIEK 306
>AL449244-1|CAC15001.1| 376|Homo sapiens hypothetical protein
protein.
Length = 376
Score = 165 bits (402), Expect = 1e-40
Identities = 91/252 (36%), Positives = 145/252 (57%), Gaps = 17/252 (6%)
Query: 47 HLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXX 106
+LP++ T L + + V ++GT HFS S DV + ++ + P+ ++VELC+ RVS
Sbjct: 59 NLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMD 118
Query: 107 XXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEM 166
A+ +KL+QAV+ L++G++ +LLK A I ++LG+APGGEFR A+ E
Sbjct: 119 ESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEA 178
Query: 167 QKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFV 226
K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+ K+++E+ K K+ +
Sbjct: 179 SKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPISKDDVERCKQKDLL 237
Query: 227 QSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR-------------VLG 273
+ E+I + P + V ERD L Y L++ R +E PR V+G
Sbjct: 238 EQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVG 294
Query: 274 VVGMGHVDGIIK 285
VVGMGHV GI K
Sbjct: 295 VVGMGHVPGIEK 306
>AL022328-5|CAI42754.1| 376|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 376
Score = 165 bits (402), Expect = 1e-40
Identities = 91/252 (36%), Positives = 145/252 (57%), Gaps = 17/252 (6%)
Query: 47 HLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXX 106
+LP++ T L + + V ++GT HFS S DV + ++ + P+ ++VELC+ RVS
Sbjct: 59 NLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMD 118
Query: 107 XXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEM 166
A+ +KL+QAV+ L++G++ +LLK A I ++LG+APGGEFR A+ E
Sbjct: 119 ESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEA 178
Query: 167 QKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFV 226
K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+ K+++E+ K K+ +
Sbjct: 179 SKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPISKDDVERCKQKDLL 237
Query: 227 QSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR-------------VLG 273
+ E+I + P + V ERD L Y L++ R +E PR V+G
Sbjct: 238 EQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVG 294
Query: 274 VVGMGHVDGIIK 285
VVGMGHV GI K
Sbjct: 295 VVGMGHVPGIEK 306
>BC012445-1|AAH12445.1| 330|Homo sapiens TRABD protein protein.
Length = 330
Score = 159 bits (385), Expect = 1e-38
Identities = 87/236 (36%), Positives = 136/236 (57%), Gaps = 17/236 (7%)
Query: 63 VVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSKKL 122
V ++GT HFS S DV + ++ + P+ ++VELC+ RVS A+ +KL
Sbjct: 29 VYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKL 88
Query: 123 KQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQ 182
+QAV+ L++G++ +LLK A I ++LG+APGGEFR A+ E K+P CK +LGDRPI
Sbjct: 89 QQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIP 148
Query: 183 ITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKK 242
+T RA +LS ++ ++ + + + P+ K+++E+ K K+ ++ E+I + P
Sbjct: 149 VTFKRAIAALSFWQKVRLAWGLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---D 204
Query: 243 IFHVFVDERDKCLAYSLQECVRSVENPR-------------VLGVVGMGHVDGIIK 285
+ V ERD L Y L++ R +E PR V+GVVGMGHV GI K
Sbjct: 205 LHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 260
>AL022328-7|CAB63044.1| 304|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 304
Score = 159 bits (385), Expect = 1e-38
Identities = 87/236 (36%), Positives = 136/236 (57%), Gaps = 17/236 (7%)
Query: 63 VVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSKKL 122
V ++GT HFS S DV + ++ + P+ ++VELC+ RVS A+ +KL
Sbjct: 3 VYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKL 62
Query: 123 KQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQ 182
+QAV+ L++G++ +LLK A I ++LG+APGGEFR A+ E K+P CK +LGDRPI
Sbjct: 63 QQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIP 122
Query: 183 ITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKK 242
+T RA +LS ++ ++ + + + P+ K+++E+ K K+ ++ E+I + P
Sbjct: 123 VTFKRAIAALSFWQKVRLAWGLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---D 178
Query: 243 IFHVFVDERDKCLAYSLQECVRSVENPR-------------VLGVVGMGHVDGIIK 285
+ V ERD L Y L++ R +E PR V+GVVGMGHV GI K
Sbjct: 179 LHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 234
>BC093029-1|AAH93029.1| 292|Homo sapiens TRABD protein protein.
Length = 292
Score = 156 bits (378), Expect = 1e-37
Identities = 79/224 (35%), Positives = 132/224 (58%), Gaps = 4/224 (1%)
Query: 47 HLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXX 106
+LP++ T L + + V ++GT HFS S DV + ++ + P+ ++VELC+ RVS
Sbjct: 59 NLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMD 118
Query: 107 XXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEM 166
A+ +KL+QAV+ L++G++ +LLK A I ++LG+APGGEFR A+ E
Sbjct: 119 ESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEA 178
Query: 167 QKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFV 226
K+P CK +LGDRPI +T RA +LS ++ ++ + + + P+ K+++E+ K K+ +
Sbjct: 179 SKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLS-DPISKDDVERCKQKDLL 237
Query: 227 QSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR 270
+ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 238 EQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPR 278
>AL022328-6|CAB63043.1| 309|Homo sapiens protein ( Human DNA
sequence from clone RP3-402G11 on chromosome
22q13.31-13.33. ).
Length = 309
Score = 142 bits (343), Expect = 2e-33
Identities = 78/216 (36%), Positives = 124/216 (57%), Gaps = 17/216 (7%)
Query: 83 VKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLK 142
++ + P+ ++VELC+ RVS A+ +KL+QAV+ L++G++ +LLK
Sbjct: 28 IREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 87
Query: 143 TYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLY 202
A I ++LG+APGGEFR A+ E K+P CK +LGDRPI +T RA +LS ++ ++ +
Sbjct: 88 VSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAW 147
Query: 203 HISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQEC 262
+ + P+ K+++E+ K K+ ++ E+I + P + V ERD L Y L++
Sbjct: 148 GLCFLS-DPISKDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQA 203
Query: 263 VRSVENPR-------------VLGVVGMGHVDGIIK 285
R +E PR V+GVVGMGHV GI K
Sbjct: 204 ARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEK 239
>AK024447-1|BAB15737.1| 145|Homo sapiens FLJ00037 protein protein.
Length = 145
Score = 36.3 bits (80), Expect = 0.13
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 214 KNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVENPR 270
K+++E+ K K+ ++ E+I + P + V ERD L Y L++ R +E PR
Sbjct: 78 KDDVERCKQKDLLEQMMAEMIGEFP---DLHRTIVSERDVYLTYMLRQAARRLELPR 131
>BC036112-1|AAH36112.1| 786|Homo sapiens suppressor of var1, 3-like
1 (S. cerevisiae) protein.
Length = 786
Score = 33.5 bits (73), Expect = 0.92
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 210 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 267
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 268 NPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 299
N G H D + ++ + ++ I P+L
Sbjct: 146 NDICFGA---AHADDLFPFFLRHAKQ-IFPVL 173
>AL596223-2|CAH71499.1| 786|Homo sapiens suppressor of var1, 3-like
1 (S. cerevisiae) protein.
Length = 786
Score = 33.5 bits (73), Expect = 0.92
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 210 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 267
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 268 NPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 299
N G H D + ++ + ++ I P+L
Sbjct: 146 NDICFGA---AHADDLFPFFLRHAKQ-IFPVL 173
>AF042169-1|AAB97370.1| 786|Homo sapiens putative ATP-dependent
mitochondrial RNA helicase protein.
Length = 786
Score = 33.5 bits (73), Expect = 0.92
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 210 KPLDKNNLEKYKDKEFVQSQFEEIIKDVPAFKKIFH-VFVDERDKCL-AYSLQECVRSVE 267
+PLDKN ++K DK + + + +++ D ++FH F+ R+ + ++SL + V
Sbjct: 86 RPLDKNEVKKVLDKFYKRKEIQKLGADYGLDARLFHQAFISFRNYIMQSHSLDVDIHIVL 145
Query: 268 NPRVLGVVGMGHVDGIIKYYGKMKQEDIVPLL 299
N G H D + ++ + ++ I P+L
Sbjct: 146 NDICFGA---AHADDLFPFFLRHAKQ-IFPVL 173
>AL590005-2|CAI14989.1| 7543|Homo sapiens dystonin protein.
Length = 7543
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 26 NTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
NT+ T YS + KK + Q LPK L ++ V + S+ +EDV +I+K
Sbjct: 3094 NTLNTDYSFLEINNKKERIEQQLPKEQALSPRSQEKEVQI---PELSQVFVEDVKDILK 3149
>AL512448-1|CAI16609.1| 7543|Homo sapiens dystonin protein.
Length = 7543
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 26 NTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
NT+ T YS + KK + Q LPK L ++ V + S+ +EDV +I+K
Sbjct: 3094 NTLNTDYSFLEINNKKERIEQQLPKEQALSPRSQEKEVQI---PELSQVFVEDVKDILK 3149
>AL512422-2|CAI14341.1| 7543|Homo sapiens dystonin protein.
Length = 7543
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 26 NTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
NT+ T YS + KK + Q LPK L ++ V + S+ +EDV +I+K
Sbjct: 3094 NTLNTDYSFLEINNKKERIEQQLPKEQALSPRSQEKEVQI---PELSQVFVEDVKDILK 3149
>AL137008-2|CAI20330.1| 7543|Homo sapiens dystonin protein.
Length = 7543
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 26 NTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
NT+ T YS + KK + Q LPK L ++ V + S+ +EDV +I+K
Sbjct: 3094 NTLNTDYSFLEINNKKERIEQQLPKEQALSPRSQEKEVQI---PELSQVFVEDVKDILK 3149
>AL096710-5|CAI22046.1| 3060|Homo sapiens dystonin protein.
Length = 3060
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 26 NTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
NT+ T YS + KK + Q LPK L ++ V + S+ +EDV +I+K
Sbjct: 2768 NTLNTDYSFLEINNKKERIEQQLPKEQALSPRSQEKEVQI---PELSQVFVEDVKDILK 2823
>AL096710-3|CAI22044.1| 7543|Homo sapiens dystonin protein.
Length = 7543
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 26 NTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
NT+ T YS + KK + Q LPK L ++ V + S+ +EDV +I+K
Sbjct: 3094 NTLNTDYSFLEINNKKERIEQQLPKEQALSPRSQEKEVQI---PELSQVFVEDVKDILK 3149
>AF400227-1|AAL62062.1| 3060|Homo sapiens bullous pemphigoid antigen 1
eB protein.
Length = 3060
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 26 NTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
NT+ T YS + KK + Q LPK L ++ V + S+ +EDV +I+K
Sbjct: 2768 NTLNTDYSFLEINNKKERIEQQLPKEQALSPRSQEKEVQI---PELSQVFVEDVKDILK 2823
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,022,747
Number of Sequences: 224733
Number of extensions: 1471643
Number of successful extensions: 3142
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3122
Number of HSP's gapped (non-prelim): 18
length of query: 300
length of database: 73,234,838
effective HSP length: 90
effective length of query: 210
effective length of database: 53,008,868
effective search space: 11131862280
effective search space used: 11131862280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -