Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
(300 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070575-1|AAL48046.1| 532|Drosophila melanogaster RE12073p pro... 174 1e-43
AE014297-1620|AAN14341.1| 532|Drosophila melanogaster CG12360-P... 174 1e-43
AE014297-1619|AAF54893.1| 532|Drosophila melanogaster CG12360-P... 174 1e-43
AY333418-1|AAP97744.1| 124|Drosophila melanogaster polyA-bindin... 29 5.9
AY061203-1|AAL28751.1| 124|Drosophila melanogaster LD15606p pro... 29 5.9
AE014297-1602|AAF54880.1| 124|Drosophila melanogaster CG12358-P... 29 5.9
AE013599-3181|AAM70867.2| 1604|Drosophila melanogaster CG30387-P... 29 5.9
AE013599-3179|AAF46710.4| 1626|Drosophila melanogaster CG30387-P... 29 5.9
AE013599-3178|AAF46711.4| 1678|Drosophila melanogaster CG30387-P... 29 5.9
>AY070575-1|AAL48046.1| 532|Drosophila melanogaster RE12073p
protein.
Length = 532
Score = 174 bits (424), Expect = 1e-43
Identities = 93/265 (35%), Positives = 159/265 (60%), Gaps = 13/265 (4%)
Query: 43 DVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSX 102
+ Q+LP + TLL + V L+GT HFS++S +DVS +++ + P+ ++VELC R+
Sbjct: 233 EFEQNLPSTVTLLNTPFGSKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHI 292
Query: 103 XXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRA 162
AK+ + K++ + + G+ +LL+ A IAK+LG+APGGEFRRA
Sbjct: 293 LKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFRRA 352
Query: 163 YHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKD 222
+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++ ++++ ++ ++ +++ +E+ K
Sbjct: 353 FEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSISIEE--VEECKQ 410
Query: 223 KEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV--------RSVENPRVLGV 274
+ ++ +E+ + PAF VFV ERD L +SLQ + V RV+GV
Sbjct: 411 SDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSLQLAALPQAAPGGQQVRPVRVVGV 467
Query: 275 VGMGHVDGIIKYYGKMKQEDIVPLL 299
VG+GH +GI K +G + + I +L
Sbjct: 468 VGIGHANGIAKMWGTVDPKKIPAIL 492
>AE014297-1620|AAN14341.1| 532|Drosophila melanogaster CG12360-PB,
isoform B protein.
Length = 532
Score = 174 bits (424), Expect = 1e-43
Identities = 93/265 (35%), Positives = 159/265 (60%), Gaps = 13/265 (4%)
Query: 43 DVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSX 102
+ Q+LP + TLL + V L+GT HFS++S +DVS +++ + P+ ++VELC R+
Sbjct: 233 EFEQNLPSTVTLLNTPFGSKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHI 292
Query: 103 XXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRA 162
AK+ + K++ + + G+ +LL+ A IAK+LG+APGGEFRRA
Sbjct: 293 LKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFRRA 352
Query: 163 YHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKD 222
+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++ ++++ ++ ++ +++ +E+ K
Sbjct: 353 FEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSISIEE--VEECKQ 410
Query: 223 KEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV--------RSVENPRVLGV 274
+ ++ +E+ + PAF VFV ERD L +SLQ + V RV+GV
Sbjct: 411 SDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSLQLAALPQAAPGGQQVRPVRVVGV 467
Query: 275 VGMGHVDGIIKYYGKMKQEDIVPLL 299
VG+GH +GI K +G + + I +L
Sbjct: 468 VGIGHANGIAKMWGTVDPKKIPAIL 492
>AE014297-1619|AAF54893.1| 532|Drosophila melanogaster CG12360-PA,
isoform A protein.
Length = 532
Score = 174 bits (424), Expect = 1e-43
Identities = 93/265 (35%), Positives = 159/265 (60%), Gaps = 13/265 (4%)
Query: 43 DVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSX 102
+ Q+LP + TLL + V L+GT HFS++S +DVS +++ + P+ ++VELC R+
Sbjct: 233 EFEQNLPSTVTLLNTPFGSKVYLVGTAHFSEESQDDVSYVIRNVRPDVVMVELCPSRIHI 292
Query: 103 XXXXXXXXXXXAKNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRA 162
AK+ + K++ + + G+ +LL+ A IAK+LG+APGGEFRRA
Sbjct: 293 LKLDEKTLLEEAKSINIPKIRGILHTHGYINGIFFILLLQMSAQIAKDLGMAPGGEFRRA 352
Query: 163 YHEMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKD 222
+ E+ K+PGC L+LGDRPI+IT+ RA ++LS+++ ++++ ++ ++ +++ +E+ K
Sbjct: 353 FEEIHKLPGCILHLGDRPIRITLYRALRALSMWQTMKLVWRLTFTDSISIEE--VEECKQ 410
Query: 223 KEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECV--------RSVENPRVLGV 274
+ ++ +E+ + PAF VFV ERD L +SLQ + V RV+GV
Sbjct: 411 SDLLEKLMQEMAGEFPAFS---DVFVRERDVFLCHSLQLAALPQAAPGGQQVRPVRVVGV 467
Query: 275 VGMGHVDGIIKYYGKMKQEDIVPLL 299
VG+GH +GI K +G + + I +L
Sbjct: 468 VGIGHANGIAKMWGTVDPKKIPAIL 492
>AY333418-1|AAP97744.1| 124|Drosophila melanogaster polyA-binding
protein-interactingprotein 2 protein.
Length = 124
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 208 NPKPLDKNNLEKYKDKEFVQSQFEEIIKD 236
N + DKN L++ +++E +Q FE +I+D
Sbjct: 41 NEEEFDKNELQRLEEEEIMQECFEAMIED 69
>AY061203-1|AAL28751.1| 124|Drosophila melanogaster LD15606p
protein.
Length = 124
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 208 NPKPLDKNNLEKYKDKEFVQSQFEEIIKD 236
N + DKN L++ +++E +Q FE +I+D
Sbjct: 41 NEEEFDKNELQRLEEEEIMQECFEAMIED 69
>AE014297-1602|AAF54880.1| 124|Drosophila melanogaster CG12358-PA
protein.
Length = 124
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 208 NPKPLDKNNLEKYKDKEFVQSQFEEIIKD 236
N + DKN L++ +++E +Q FE +I+D
Sbjct: 41 NEEEFDKNELQRLEEEEIMQECFEAMIED 69
>AE013599-3181|AAM70867.2| 1604|Drosophila melanogaster CG30387-PC,
isoform C protein.
Length = 1604
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 115 KNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIP 170
KN S KQ + ++ G L + + Y D+A +P GE A ++Q P
Sbjct: 1286 KNSVSHMEKQVTLEEQMICGTLQTLNEEAYEDVASSERPSPTGEMLAAVAQLQLAP 1341
>AE013599-3179|AAF46710.4| 1626|Drosophila melanogaster CG30387-PA,
isoform A protein.
Length = 1626
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 115 KNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIP 170
KN S KQ + ++ G L + + Y D+A +P GE A ++Q P
Sbjct: 1308 KNSVSHMEKQVTLEEQMICGTLQTLNEEAYEDVASSERPSPTGEMLAAVAQLQLAP 1363
>AE013599-3178|AAF46711.4| 1678|Drosophila melanogaster CG30387-PB,
isoform B protein.
Length = 1678
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/56 (28%), Positives = 25/56 (44%)
Query: 115 KNFDSKKLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIP 170
KN S KQ + ++ G L + + Y D+A +P GE A ++Q P
Sbjct: 1360 KNSVSHMEKQVTLEEQMICGTLQTLNEEAYEDVASSERPSPTGEMLAAVAQLQLAP 1415
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,445,579
Number of Sequences: 52641
Number of extensions: 517547
Number of successful extensions: 1293
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1278
Number of HSP's gapped (non-prelim): 9
length of query: 300
length of database: 24,830,863
effective HSP length: 85
effective length of query: 215
effective length of database: 20,356,378
effective search space: 4376621270
effective search space used: 4376621270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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