Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
(300 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical pr... 152 3e-37
U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical pr... 152 3e-37
Z68301-4|CAA92623.2| 536|Caenorhabditis elegans Hypothetical pr... 30 2.3
U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical pr... 29 3.1
U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical ... 29 4.0
Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical pr... 29 5.3
U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical pr... 29 5.3
AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical ... 29 5.3
AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical ... 29 5.3
AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical ... 29 5.3
AL117207-18|CAB60407.2| 476|Caenorhabditis elegans Hypothetical... 28 7.1
AB049441-1|BAB15803.1| 450|Caenorhabditis elegans CeCHK2 protein. 28 7.1
AB041996-1|BAB20578.1| 476|Caenorhabditis elegans Ce-CDS-1 prot... 28 7.1
AF016438-9|AAB65891.2| 394|Caenorhabditis elegans Nuclear hormo... 28 9.3
>U70854-4|AAP40536.1| 452|Caenorhabditis elegans Hypothetical
protein F38A5.2a protein.
Length = 452
Score = 152 bits (368), Expect = 3e-37
Identities = 80/241 (33%), Positives = 135/241 (56%), Gaps = 20/241 (8%)
Query: 61 ATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSK 120
+T+ L+GT HFSK+S EDVS ++ + P+ +++ELC R+S AK+ +S+
Sbjct: 156 STIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQ 215
Query: 121 KLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRP 180
K+ Q +K + G+LH +LL A + +EL +APGGEFR A+ C++ LGDRP
Sbjct: 216 KIIQTMKQNGAIQGILHVLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRP 275
Query: 181 IQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAF 240
IQ+T+ RA SLS+++ + +H++ S+ + + +E+ K ++ ++ E+ D P
Sbjct: 276 IQVTLQRALASLSIWQKIRFFFHVAFSHREKITAEEVERCKQRDLLEQLLAEMADDFP-- 333
Query: 241 KKIFHVFVDERDKCLAYSLQECV--RSVENP---------------RVLGVVGMGHVDGI 283
++ +FV+ERD + ++L V SVE V+ VVG+GH GI
Sbjct: 334 -QLSQIFVEERDAYMTHALHMLVHRNSVEKRAQWLRGTTGQQFQPLTVVAVVGIGHTPGI 392
Query: 284 I 284
+
Sbjct: 393 V 393
>U70854-3|AAP40537.1| 450|Caenorhabditis elegans Hypothetical
protein F38A5.2b protein.
Length = 450
Score = 152 bits (368), Expect = 3e-37
Identities = 80/241 (33%), Positives = 135/241 (56%), Gaps = 20/241 (8%)
Query: 61 ATVVLLGTVHFSKQSIEDVSEIVKILNPNGILVELCRQRVSXXXXXXXXXXXXAKNFDSK 120
+T+ L+GT HFSK+S EDVS ++ + P+ +++ELC R+S AK+ +S+
Sbjct: 154 STIYLIGTAHFSKESQEDVSNTIRAVQPDFVMLELCPSRISIISMDEARLLSEAKDLNSQ 213
Query: 121 KLKQAVKGQNLVTGMLHAMLLKTYADIAKELGVAPGGEFRRAYHEMQKIPGCKLYLGDRP 180
K+ Q +K + G+LH +LL A + +EL +APGGEFR A+ C++ LGDRP
Sbjct: 214 KIIQTMKQNGAIQGILHVLLLSMSAHVTRELSMAPGGEFRAAHRAAVATENCRVVLGDRP 273
Query: 181 IQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPAF 240
IQ+T+ RA SLS+++ + +H++ S+ + + +E+ K ++ ++ E+ D P
Sbjct: 274 IQVTLQRALASLSIWQKIRFFFHVAFSHREKITAEEVERCKQRDLLEQLLAEMADDFP-- 331
Query: 241 KKIFHVFVDERDKCLAYSLQECV--RSVENP---------------RVLGVVGMGHVDGI 283
++ +FV+ERD + ++L V SVE V+ VVG+GH GI
Sbjct: 332 -QLSQIFVEERDAYMTHALHMLVHRNSVEKRAQWLRGTTGQQFQPLTVVAVVGIGHTPGI 390
Query: 284 I 284
+
Sbjct: 391 V 391
>Z68301-4|CAA92623.2| 536|Caenorhabditis elegans Hypothetical
protein W01B6.5 protein.
Length = 536
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 194 VYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDVPA-FKKIFH--VFV-D 249
V+ G V++ I + +P D N + ++ ++QF ++ P+ +K+ VF D
Sbjct: 453 VFSFGCVIWEIYENGNQPHDGKNAQTIRNLT-KKNQFLKLTNSAPSELRKLIEERVFTSD 511
Query: 250 ERDKCLAYSLQECVRSVENPRV 271
++C ++ +C +E P V
Sbjct: 512 PENRCSMTTIVQCAEKIEKPPV 533
>U80025-1|AAD32271.1| 1064|Caenorhabditis elegans Hypothetical
protein F02C9.3 protein.
Length = 1064
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 50 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
K+ TL +N+ + LGTV FS ++E+V + VK
Sbjct: 433 KTGTLTKNEMHFKKIHLGTVAFSGDALEEVEQHVK 467
>Z68114-2|CAA92158.1| 463|Caenorhabditis elegans Hypothetical
protein F17A2.3 protein.
Length = 463
Score = 29.5 bits (63), Expect = 3.1
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 165 EMQKIPGCKLYLGDRPIQITIARAFQSLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKE 224
E++KI +L + + + + FQS S Y+L I N + D K KD
Sbjct: 204 ELRKILEAELDVEEEDGEQIVEHNFQSTSSYKLNIKTAAIHQVNHQESDHTRPNKSKDLR 263
Query: 225 FVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSLQECVRSVEN 268
S+ + + +D+PA K + E D + Q RSV +
Sbjct: 264 --SSEDQVLTEDLPAASKTPPASISELDMGEQGAEQRVTRSVHS 305
>U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical
protein R03H4.1 protein.
Length = 642
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 203 HISTSNPKPLDKNNLEKYK---DKEFVQSQFEEIIKDVPAFKKIFHVFVDERDKCLAYSL 259
H N L+ +L ++K D V+ +FE++ F + HVFV E DK L +
Sbjct: 547 HYLIQNSDELESLHLNRFKSDDDMRCVKKRFEKVKCKKCQFFDLSHVFV-EGDKYLTFDR 605
Query: 260 QECVRSVENPRVLGVVGM 277
+ V+N L G+
Sbjct: 606 DSLISYVDNTIHLTSAGL 623
>AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical
protein T07D3.9a protein.
Length = 441
Score = 29.1 bits (62), Expect = 4.0
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 220 YKDKEFVQSQFEEIIKD---VPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVG 276
Y D ++VQ + I D +P K+ H + E + + SVENP VL VV
Sbjct: 357 YTDGKYVQVKVAATISDQHKLPELAKLNHPTLGEEARVNTNVFNFTMESVENPNVLRVVP 416
Query: 277 MGHV 280
+V
Sbjct: 417 KHYV 420
>Z81078-8|CAJ43906.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 50 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
K+ TL +N+ + LGTV FS + E+V + V+
Sbjct: 440 KTGTLTKNEMHFKKIHLGTVAFSSDAFEEVGQHVR 474
>Z81078-7|CAD92377.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 50 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
K+ TL +N+ + LGTV FS + E+V + V+
Sbjct: 404 KTGTLTKNEMHFKKIHLGTVAFSSDAFEEVGQHVR 438
>Z81078-6|CAB03079.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 50 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
K+ TL +N+ + LGTV FS + E+V + V+
Sbjct: 443 KTGTLTKNEMHFKKIHLGTVAFSSDAFEEVGQHVR 477
>U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical
protein F57F4.1 protein.
Length = 461
Score = 28.7 bits (61), Expect = 5.3
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 220 YKDKEFVQSQFEEIIKD---VPAFKKIFHVFVDERDKCLAYSLQECVRSVENPRVLGVVG 276
Y D +++Q + I D +P K+ H + + + + SVENP VL VV
Sbjct: 377 YTDGKYLQMKVAASISDQNKLPELAKLNHPTLGQEARVNTNVFNFTMESVENPNVLTVVP 436
Query: 277 MGHVDGIIKYYGK 289
+V I G+
Sbjct: 437 KHYVHAITYLEGR 449
>AL021466-5|CAJ43908.1| 1071|Caenorhabditis elegans Hypothetical
protein F36H2.1c protein.
Length = 1071
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 50 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
K+ TL +N+ + LGTV FS + E+V + V+
Sbjct: 440 KTGTLTKNEMHFKKIHLGTVAFSSDAFEEVGQHVR 474
>AL021466-3|CAD92394.1| 1035|Caenorhabditis elegans Hypothetical
protein F36H2.1b protein.
Length = 1035
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 50 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
K+ TL +N+ + LGTV FS + E+V + V+
Sbjct: 404 KTGTLTKNEMHFKKIHLGTVAFSSDAFEEVGQHVR 438
>AL021466-2|CAA16284.2| 1074|Caenorhabditis elegans Hypothetical
protein F36H2.1a protein.
Length = 1074
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 50 KSATLLQNDKQATVVLLGTVHFSKQSIEDVSEIVK 84
K+ TL +N+ + LGTV FS + E+V + V+
Sbjct: 443 KTGTLTKNEMHFKKIHLGTVAFSSDAFEEVGQHVR 477
>AL117207-18|CAB60407.2| 476|Caenorhabditis elegans Hypothetical
protein Y60A3A.12 protein.
Length = 476
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MKCPICVIARQLLFKNIESIVTAKPNTVQT 30
MKC C A+Q + K+I+ I A P +QT
Sbjct: 436 MKCADCRTAKQDILKSIKPISAAAPAALQT 465
>AB049441-1|BAB15803.1| 450|Caenorhabditis elegans CeCHK2 protein.
Length = 450
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MKCPICVIARQLLFKNIESIVTAKPNTVQT 30
MKC C A+Q + K+I+ I A P +QT
Sbjct: 410 MKCADCRTAKQDILKSIKPISAAAPAALQT 439
>AB041996-1|BAB20578.1| 476|Caenorhabditis elegans Ce-CDS-1
protein.
Length = 476
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 1 MKCPICVIARQLLFKNIESIVTAKPNTVQT 30
MKC C A+Q + K+I+ I A P +QT
Sbjct: 436 MKCADCRTAKQDILKSIKPISAAAPAALQT 465
>AF016438-9|AAB65891.2| 394|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 103 protein.
Length = 394
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 18 ESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQATVVLLGTVHFSKQSIE 77
ES+V A+ N + YY++K+ L S L K L+ D + + K+ +
Sbjct: 324 ESLVQAQANQLHDYYAKKLKLSNYSSRLTQLMKITRTLEADMR--------LRIEKKKVA 375
Query: 78 DVSEIVKI 85
DV I KI
Sbjct: 376 DVFNIFKI 383
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.137 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,917,859
Number of Sequences: 27539
Number of extensions: 273063
Number of successful extensions: 727
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 710
Number of HSP's gapped (non-prelim): 20
length of query: 300
length of database: 12,573,161
effective HSP length: 81
effective length of query: 219
effective length of database: 10,342,502
effective search space: 2265007938
effective search space used: 2265007938
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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