GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000289-TA|BGIBMGA000289-PA|IPR002816|TraB determinant
         (300 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    25   0.82 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.1  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.4  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 191 SLSVYELGQVLYHISTSNPKPLDKNNLEKYKDKEFVQSQFEEIIKDV 237
           SL++   GQVL   S+  PKPL K       D +    +  + I DV
Sbjct: 15  SLTLGPAGQVLAGSSSPRPKPLLKKEYPLVMDTKLKIIEILQFILDV 61


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 13   LFKNIESIVTAKPNTVQTYYSQKVLLRKKSDVSQHLPKSATLLQNDKQA 61
            ++ N+E      P    T +  KV+ R  +D     PK   +   DKQA
Sbjct: 1121 MYMNLEG-EQKDPVIFSTSFDSKVMTRPDTDSENWTPKMMAVEPTDKQA 1168


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 64  VLLGTVHFSKQSIEDVSEIVKILNPNGILVELC 96
           V+ G +H   + I+    ++K+L+   IL  +C
Sbjct: 250 VVQGAIHGDSRQIQSRKSVIKMLSAVVILFFIC 282


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.137    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,133
Number of Sequences: 429
Number of extensions: 3292
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 3
length of query: 300
length of database: 140,377
effective HSP length: 57
effective length of query: 243
effective length of database: 115,924
effective search space: 28169532
effective search space used: 28169532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)